View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_34 (Length: 349)
Name: NF17836_low_34
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 8055653 - 8055323
Alignment:
| Q |
19 |
caaatatggtcggtgagaaaagtacctgaatttcagacttggagagaccaggaacatccaagaaaaatatatactccttaggagtatccaaaatgtccac |
118 |
Q |
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| T |
8055653 |
caaatatggtgggtgagaaaagtacctgaatttcagacttggagagaccaggaacatccaagaaaaatatatactctttaggagtatccaaaatgtccac |
8055554 |
T |
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| Q |
119 |
tgggatactggaagcccttcttctgctctcatgattctcatgatcccttgaaggagtttcatgaacatgattcaacaaattgttcactacactacttaaa |
218 |
Q |
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| T |
8055553 |
cgggatactagaagcccttcttctgctctcatgattctcatgatcccttgaaggagtttcatgaacatgattcaagaaattgttcactacactactcaaa |
8055454 |
T |
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| Q |
219 |
tccatgtcaaacaaagtcatcttcaaattcactccacacaactaaattctcttgtttgattatttgtaatgatgagatgaatgtttaaggatgtttttgt |
318 |
Q |
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| T |
8055453 |
tccatgtcaaacaaagtcatcttcaaattcactccacacaactaaattctcttgtttgattatttgtaatgatgagatgaatgtttaaggatgtttttgt |
8055354 |
T |
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| Q |
319 |
tttgtttggtattggtgagaagcctttactt |
349 |
Q |
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| T |
8055353 |
tttgtttggtattggtgagaagcttttactt |
8055323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 8048386 - 8048340
Alignment:
| Q |
195 |
aaattgttcactacactacttaaatccatgtcaaacaaagtcatctt |
241 |
Q |
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| T |
8048386 |
aaattgtttagtacactactcaaatccatgtcaaacaaagtcatctt |
8048340 |
T |
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