View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_38 (Length: 320)
Name: NF17836_low_38
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 13726690 - 13726407
Alignment:
| Q |
21 |
tgccacaccacattaggaaaaggtctaaatcctacatggaaaggtcacaatcaattgatgctttgcaatcttttttgttcaatggattcattgattagaa |
120 |
Q |
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| T |
13726690 |
tgccacaccacattaggaaaaggtcaaaatcctacatggaaaggtcacaatcacttgatgctttgctatcttttttgttcaatgcattcattgattagaa |
13726591 |
T |
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| Q |
121 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
220 |
Q |
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| T |
13726590 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
13726491 |
T |
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| Q |
221 |
atgcaccacacatcttagtgttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgtttatcccaaa |
304 |
Q |
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| T |
13726490 |
atgcaccacacatcttagtgtttccatatccattacaaggtcacataaaccctatgcttcaattctcgaaacgtttatcccaaa |
13726407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 13686360 - 13686416
Alignment:
| Q |
241 |
ttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgttta |
297 |
Q |
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| T |
13686360 |
ttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgttta |
13686416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 13697432 - 13697390
Alignment:
| Q |
255 |
acaaggccacataaaccctatgcttcaattctcaaaacgttta |
297 |
Q |
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| T |
13697432 |
acaaggtcacataaacccaatgcttcaattctcaaaacgttta |
13697390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 30848246 - 30848197
Alignment:
| Q |
238 |
gtgttaccgtatccattacaaggccacataaaccctatgcttcaattctc |
287 |
Q |
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|||||| | |||||||||||||| |||||||| || |||||||||||||| |
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| T |
30848246 |
gtgttatcatatccattacaaggtcacataaatccaatgcttcaattctc |
30848197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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