View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_4 (Length: 604)
Name: NF17836_low_4
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 502
Target Start/End: Complemental strand, 22484427 - 22483934
Alignment:
| Q |
6 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaaaccataacacnnnnnnnnn- |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22484427 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaa-ccataacactttttttttt |
22484329 |
T |
|
| Q |
105 |
-----atctctaccttcaaactaagttgattaagaagtgttttgtatggggatggattcttctagtggacaacaacaggtgaaatatttatttcatatca |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22484328 |
tttttatctctaccttcaaactaagttgattaagaagtgttt-gtatggggatggattcttctagtgggcaacaacaggtgaaatatttatttcatatca |
22484230 |
T |
|
| Q |
200 |
tatcatatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagtact |
299 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22484229 |
tat-atatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagt--- |
22484134 |
T |
|
| Q |
300 |
atactactttgaagaatgagaaaggaacatattattttccttaannnnnnnnnncttctttgaagaacaccctttggaagaaatataattagtaaagcta |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22484133 |
--actactttgaagaatgagaaaggaacatattattttcctt-attttttttttcttctttgaagaacaccctttggaagaaatataattagtaaagcta |
22484037 |
T |
|
| Q |
400 |
tgttgctctcctatgttactatactactcatggtgttttctatgaaccatatatgtatatggctggggcctataattaatatttgatggaataaagtcag |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
22484036 |
tgttgctctcctatgttactatactactcatggtgttttttatgaaccatatatgtatatagctggggcctagaattaatatttgatggaataaagtcag |
22483937 |
T |
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