View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_41 (Length: 295)

Name: NF17836_low_41
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_41
NF17836_low_41
[»] chr8 (4 HSPs)
chr8 (1-276)||(42015351-42015626)
chr8 (45-75)||(25869268-25869298)
chr8 (42-75)||(14949901-14949934)
chr8 (45-73)||(28769343-28769371)
[»] chr3 (4 HSPs)
chr3 (45-76)||(21862176-21862207)
chr3 (45-75)||(36200134-36200164)
chr3 (46-75)||(12923327-12923356)
chr3 (46-75)||(41724251-41724280)
[»] scaffold0311 (1 HSPs)
scaffold0311 (45-75)||(10619-10649)
[»] chr7 (4 HSPs)
chr7 (45-75)||(24363603-24363633)
chr7 (45-75)||(33894665-33894695)
chr7 (45-73)||(39281007-39281035)
chr7 (47-75)||(39566209-39566237)
[»] chr6 (4 HSPs)
chr6 (45-75)||(27909640-27909670)
chr6 (46-75)||(9027617-9027646)
chr6 (45-73)||(2167162-2167190)
chr6 (45-73)||(2178795-2178823)
[»] chr5 (4 HSPs)
chr5 (45-75)||(35963279-35963309)
chr5 (43-76)||(28409366-28409399)
chr5 (45-73)||(6109521-6109549)
chr5 (45-77)||(8651353-8651385)
[»] chr2 (2 HSPs)
chr2 (42-76)||(33525968-33526002)
chr2 (46-75)||(30538175-30538204)
[»] chr1 (6 HSPs)
chr1 (45-75)||(12477289-12477319)
chr1 (45-75)||(30371186-30371216)
chr1 (46-75)||(27140517-27140546)
chr1 (46-75)||(28689454-28689483)
chr1 (45-74)||(39347970-39347999)
chr1 (45-73)||(6659552-6659580)
[»] chr4 (2 HSPs)
chr4 (42-75)||(23819124-23819157)
chr4 (45-73)||(5131254-5131282)
[»] scaffold0254 (1 HSPs)
scaffold0254 (45-73)||(3511-3539)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 42015626 - 42015351
Alignment:
Q  1 taagctatttgttgttttcgtaaaccattattagcaaaataatagaaataagctgaaaacaacttatggacatgtttcccctcnnnnnnnnnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  42015626 taagctatttgttgttttcgtaaaccattattagcaaaataatagaaataagctgaaaacaacttatggacatgtttcccctcaaaaataaaaacaaaaa 42015527  T
Q  101 cctatggacatgctataannnnnnnncataagctctttgaaagagccttgcaactacttatattatcaatatggttccgtaactttgtttggacagctca 200  Q
    ||||||||| ||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42015526 cctatggacctgctataattttttttcataagctctttgaaaaagccttgcaactacttatattatcaatatggttccgtaactttgtttggacagctca 42015427  T
Q  201 ataagctagctagcttttaaacccatataactnnnnnnngactcgtttggtgaccatcattttctaacaagctaat 276  Q
    |||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||    
T  42015426 ataagctagctagcttttaaactcatataactaaaaaaagactcgtttggtgaccatcattttctaacaagctaat 42015351  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 25869298 - 25869268
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  25869298 gaaataagctgaaaacaacttatggacatgt 25869268  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 14949901 - 14949934
Alignment:
Q  42 atagaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||| |||||||||||||    
T  14949901 atagaaataagctgaaaacagcttatggacatgt 14949934  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 28769371 - 28769343
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  28769371 gaaataagctgaaaacaacttatggacat 28769343  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 76
Target Start/End: Complemental strand, 21862207 - 21862176
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgtt 76  Q
    ||||||||||||||||||||||||||||||||    
T  21862207 gaaataagctgaaaacaacttatggacatgtt 21862176  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 36200134 - 36200164
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  36200134 gaaataagctgaaaacaacttatggacatgt 36200164  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 12923356 - 12923327
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  12923356 aaataagctgaaaacaacttatggacatgt 12923327  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 41724251 - 41724280
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgt 41724280  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 10649 - 10619
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  10649 gaaataagctgaaaacaacttatggacatgt 10619  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 24363633 - 24363603
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  24363633 gaaataagctgaaaacaacttatggacatgt 24363603  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 33894665 - 33894695
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  33894665 gaaataagctgaaaacaacttatggacatgt 33894695  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 39281007 - 39281035
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  39281007 gaaataagctgaaaacaacttatggacat 39281035  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 39566237 - 39566209
Alignment:
Q  47 aataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||    
T  39566237 aataagctgaaaacaacttatggacatgt 39566209  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 27909670 - 27909640
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  27909670 gaaataagctgaaaacaacttatggacatgt 27909640  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 9027617 - 9027646
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  9027617 aaataagctgaaaacaacttatggacatgt 9027646  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 2167190 - 2167162
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  2167190 gaaataagctgaaaacaacttatggacat 2167162  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 2178823 - 2178795
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  2178823 gaaataagctgaaaacaacttatggacat 2178795  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 35963279 - 35963309
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  35963279 gaaataagctgaaaacaacttatggacatgt 35963309  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 28409399 - 28409366
Alignment:
Q  43 tagaaataagctgaaaacaacttatggacatgtt 76  Q
    ||||||||||||||||| ||||||||||||||||    
T  28409399 tagaaataagctgaaaataacttatggacatgtt 28409366  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 6109521 - 6109549
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  6109521 gaaataagctgaaaacaacttatggacat 6109549  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 8651385 - 8651353
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgttt 77  Q
    |||||| ||||||||||||||||||||||||||    
T  8651385 gaaatatgctgaaaacaacttatggacatgttt 8651353  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 33526002 - 33525968
Alignment:
Q  42 atagaaataagctgaaaacaacttatggacatgtt 76  Q
    ||||||||||||||||| |||||||||||||||||    
T  33526002 atagaaataagctgaaaccaacttatggacatgtt 33525968  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 30538204 - 30538175
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  30538204 aaataagctgaaaacaacttatggacatgt 30538175  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 12477319 - 12477289
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  12477319 gaaataagctgaaaacaacttatggacatgt 12477289  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 30371186 - 30371216
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatgt 75  Q
    |||||||||||||||||||||||||||||||    
T  30371186 gaaataagctgaaaacaacttatggacatgt 30371216  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 27140517 - 27140546
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  27140517 aaataagctgaaaacaacttatggacatgt 27140546  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 28689483 - 28689454
Alignment:
Q  46 aaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||||||||||||||||||||||    
T  28689483 aaataagctgaaaacaacttatggacatgt 28689454  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 39347999 - 39347970
Alignment:
Q  45 gaaataagctgaaaacaacttatggacatg 74  Q
    ||||||||||||||||||||||||||||||    
T  39347999 gaaataagctgaaaacaacttatggacatg 39347970  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 6659552 - 6659580
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  6659552 gaaataagctgaaaacaacttatggacat 6659580  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 23819124 - 23819157
Alignment:
Q  42 atagaaataagctgaaaacaacttatggacatgt 75  Q
    ||||||||||| ||||||||||||||||||||||    
T  23819124 atagaaataagatgaaaacaacttatggacatgt 23819157  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 5131282 - 5131254
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  5131282 gaaataagctgaaaacaacttatggacat 5131254  T

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Target: scaffold0254 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 3511 - 3539
Alignment:
Q  45 gaaataagctgaaaacaacttatggacat 73  Q
    |||||||||||||||||||||||||||||    
T  3511 gaaataagctgaaaacaacttatggacat 3539  T

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