View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_45 (Length: 277)
Name: NF17836_low_45
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5482165 - 5482304
Alignment:
| Q |
1 |
cacatcttcataatagttgggcatccgtattaagcttttttacatgattaatgcaacatattattcttttaataaaatgtccaaaccaaaaatctatctt |
100 |
Q |
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| T |
5482165 |
cacatcttcataatagttgggcatccgtattaagcttttttacatgattaatgcaacatattattcttttaataaaatgtccaaaccaaaaatctatctt |
5482264 |
T |
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| Q |
101 |
aaattgttctatcatctttgatacaatgatcctgtttggt |
140 |
Q |
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| T |
5482265 |
aaattattctatcatctttgatacaatgatcctgtttggt |
5482304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 5482333 - 5482443
Alignment:
| Q |
170 |
gataacggataacttaatcgataacaaatgaatttatagtcgatatattaaatttatagtattttct----ttaacggtttaattagctaaaaatattaa |
265 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
5482333 |
gataatggataacttaatcgataacaaatgaatttatagtcgatatattaaatttatagtattttctaaaattaacgttttaattagctaaaaatattaa |
5482432 |
T |
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| Q |
266 |
attacacaaaa |
276 |
Q |
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| T |
5482433 |
attacacaaaa |
5482443 |
T |
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