View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_48 (Length: 257)

Name: NF17836_low_48
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_48
NF17836_low_48
[»] chr7 (1 HSPs)
chr7 (1-242)||(44111963-44112205)
[»] chr2 (2 HSPs)
chr2 (175-235)||(24324326-24324386)
chr2 (1-81)||(24324482-24324562)
[»] chr3 (2 HSPs)
chr3 (175-237)||(38896854-38896916)
chr3 (21-88)||(36153989-36154056)
[»] chr1 (2 HSPs)
chr1 (1-82)||(47723007-47723088)
chr1 (1-82)||(47729999-47730080)
[»] chr8 (1 HSPs)
chr8 (1-61)||(16797267-16797327)
[»] chr4 (1 HSPs)
chr4 (1-82)||(13102898-13102979)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44112205 - 44111963
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctgagtaaaaagatgttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112205 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctgagtaaaaagatgttgtaa 44112106  T
Q  101 ttcatatatgcacacaattaaatccaacatgagaaat-nnnnnnnntcatgcaatgaatatataaatggccaacacacatagtcaacgtccatttcgacc 199  Q
    ||||||||||||||||||||||||||||||| |||||         |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  44112105 ttcatatatgcacacaattaaatccaacatgtgaaataaaaaaaaatcatgcaatgaataaataaatggctaacacacatagtcaacgtccatttcgacc 44112006  T
Q  200 atgtaagtgcggtatttcaaacgaagctcatttatcctcctct 242  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  44112005 atgtaagtgtggtatttcaaacaaagctcatttatcctcctct 44111963  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 24324386 - 24324326
Alignment:
Q  175 cacatagtcaacgtccatttcgaccatgtaagtgcggtatttcaaacgaagctcatttatc 235  Q
    |||||| ||||||||||| || ||||| || |||||||||||||||||||| |||||||||    
T  24324386 cacataatcaacgtccatctcaaccatataggtgcggtatttcaaacgaaggtcatttatc 24324326  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24324562 - 24324482
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccct 81  Q
    ||||||||||||  |||||| |||| || ||||||||| |||| |||| ||| |||||||| |||| ||| | ||||||||    
T  24324562 ttggatccaccagagttgcacattgctgcatctggtctccaaaatcattcgaaaacatcataggaatcattattgcaccct 24324482  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 38896854 - 38896916
Alignment:
Q  175 cacatagtcaacgtccatttcgaccatgtaagtgcggtatttcaaacgaagctcatttatcct 237  Q
    |||||| ||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||    
T  38896854 cacataatcaacgtccatctcaaccatataggtgcggtatttcaaacgaaggtcattcatcct 38896916  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 36154056 - 36153989
Alignment:
Q  21 tattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctgagtaaa 88  Q
    ||||| |||||||||||| |||| ||||| || ||||||||||| |||||||  |||||||| |||||    
T  36154056 tattgatggatctggtctccaaaatcatgggaaaacatcattggcagcataatagcaccctgtgtaaa 36153989  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47723088 - 47723007
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctg 82  Q
    ||||||||||||  || ||||||||||||||||||||| |||| ||||| || |||||||| || | |||||  ||||||||    
T  47723088 ttggatccaccagagtagcatattgttggatctggtctccaaaatcatgggaaaacatcatgggcaacataatagcaccctg 47723007  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47730080 - 47729999
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctg 82  Q
    ||||||| ||||  || ||||||||||||||||||||| |||| ||||| || ||||||||||| | |||||  ||||||||    
T  47730080 ttggatctaccagagtagcatattgttggatctggtctccaaaatcatgggaaaacatcattggcatcataatagcaccctg 47729999  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16797327 - 16797267
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcat 61  Q
    ||||||||||||  || ||||||||||||||||||||| |||| ||||| || ||||||||    
T  16797327 ttggatccaccagagtagcatattgttggatctggtctccaaaatcatgggaaaacatcat 16797267  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13102898 - 13102979
Alignment:
Q  1 ttggatccaccaacgttgcatattgttggatctggtcttcaaagtcatgcgagaacatcattggaagcataactgcaccctg 82  Q
    ||||||| ||||  || ||||||||||||||||||||| |||| ||||| || |||||||| || | |||||  ||||||||    
T  13102898 ttggatcaaccagagtagcatattgttggatctggtctccaaaatcatgggaaaacatcataggcaacataatagcaccctg 13102979  T

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