View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_50 (Length: 253)
Name: NF17836_low_50
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_50 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0983 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 41957813 - 41958004
Alignment:
| Q |
62 |
gaggtggaatcacccgaatcgcgtttctgctcaatgaattctgcttttgcccaaaaccgcgcgtgtcgctgaagctagaattcgtgtatattgcttttaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
41957813 |
gaggtggaatcacccgaatcgcgtttctgctcaatgaattctgcttttgcccaaaaccgcgtgtgtcgctgaagctagatttcgtgtatattacttttaa |
41957912 |
T |
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| Q |
162 |
tttttaaatgaatttgtgaaccaataataatattttactaattttataccattatactaaatttaattattcaacataagtttaacaggatt |
253 |
Q |
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| T |
41957913 |
tttttaaatgaatttgtgaaccaataataatattttactaattttataccattatactaaatttaattattcaacataagtttaacaggatt |
41958004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 29749247 - 29749165
Alignment:
| Q |
161 |
atttttaaatgaatttgtgaaccaataataatattttactaattttataccattatactaaatttaattattcaacataagttta |
245 |
Q |
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| T |
29749247 |
atttttaaatgaatttgtaaatcaataataatatttta-ttattttatacaattatgctaaattt-attattcaacataagttta |
29749165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 40885113 - 40885157
Alignment:
| Q |
163 |
ttttaaatgaatttgtgaaccaataataatattttactaatttta |
207 |
Q |
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| T |
40885113 |
ttttaaatgaatttgtgaaccaataattatatttgtctaatttta |
40885157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 1218162 - 1218353
Alignment:
| Q |
62 |
gaggtggaatcacccgaatcgcgtttctgctcaatgaattctgcttttgcccaaaaccgcgcgtgtcgctgaagctagaattcgtgtatattgcttttaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
1218162 |
gaggtggaatcacccgaatcgcgtttctgctcaatgaattctgcttttgcccaaaaccgtgcatgtcgctgaagctagaattcgtgtatattacttttaa |
1218261 |
T |
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| Q |
162 |
tttttaaatgaatttgtgaaccaataataatattttactaattttataccattatactaaatttaattattcaacataagtttaacaggatt |
253 |
Q |
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| T |
1218262 |
tttttaaatgaatttgtgaaccaataataatattttactaattttatacgattatactaaatttaattattcaacataagtttaacaggatt |
1218353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 49790096 - 49790176
Alignment:
| Q |
167 |
aaatgaatttgtgaaccaataataatattttactaattttataccattatactaaa-tttaattattcaacataagtttaa |
246 |
Q |
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| T |
49790096 |
aaatgattttctaaaccaataataatattttactaattttatacgattatcttaaatttttattattcaacataggtttaa |
49790176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 30081960 - 30081912
Alignment:
| Q |
194 |
ttttactaattttataccattatactaaatttaattattcaacataagt |
242 |
Q |
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| T |
30081960 |
ttttactaattttatgcaattatactaaatttaattattcagcataagt |
30081912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 2480 - 2436
Alignment:
| Q |
163 |
ttttaaatgaatttgtgaaccaataataatattttactaatttta |
207 |
Q |
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| T |
2480 |
ttttaaatgaatttgtgaaccaataattatatttgtctaatttta |
2436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 4370068 - 4370008
Alignment:
| Q |
186 |
taataatattttactaattttataccattatactaaatttaattattcaacataagtttaa |
246 |
Q |
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||||||| ||||||||||| ||| |||||| |||||||||||||| ||||||||||||| |
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| T |
4370068 |
taataattttttactaattatatgtaattatattaaatttaattattgaacataagtttaa |
4370008 |
T |
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