View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_51 (Length: 250)
Name: NF17836_low_51
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_51 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 33659281 - 33659047
Alignment:
| Q |
16 |
ataagtgattatgaatttcaccgttaaacacttaaaaataatgaaattattccatatcaaattattacccttgtatactacatcaaccacagcttcccta |
115 |
Q |
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| T |
33659281 |
ataagtaattatgagtttcaccgttaaacacttaaaaataatgaaattattccatatcaaattattacccttgtatactacatcaaccacagcttcccta |
33659182 |
T |
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| Q |
116 |
aaagtaaatgagattatacttgccatcctcagactttccaatattacctacaatacaagatcttgatgagaaatattttcatgaagttgctttcaatata |
215 |
Q |
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| T |
33659181 |
aaagtaaatgagattatacttgccatcctcagactttccaatattacctacaatacaagatcttgatgagaaatattttgatgaagttgctttcaacata |
33659082 |
T |
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| Q |
216 |
aaacaatagtagtgtgtgtgtatcatagcataccc |
250 |
Q |
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| T |
33659081 |
aaacaatagtagtgtgtgtgtatcatagcataccc |
33659047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 33699958 - 33699865
Alignment:
| Q |
74 |
aaattattacccttgtatactacatcaaccacagcttccctaaaagtaaatgagattatacttgccatcctcagactttccaatattacctaca |
167 |
Q |
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| T |
33699958 |
aaattcttacccttgtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctaca |
33699865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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