View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_53 (Length: 245)
Name: NF17836_low_53
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10994306 - 10994535
Alignment:
| Q |
1 |
tgttagtgttttctctatttatttttcattatctgcaagttaaactgttgtcaaatgtattttacatacttataaatgtcctcctttattttttggtgaa |
100 |
Q |
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| T |
10994306 |
tgttagtgttttctctatttatttttcattatctgcaagttaaactgttgttaaatgtattttacatacttataaatgtcctcctttattttttggtgaa |
10994405 |
T |
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| Q |
101 |
aaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaataggaacaaagtcaa |
200 |
Q |
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| T |
10994406 |
aaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaataggaacaaagtcaa |
10994505 |
T |
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| Q |
201 |
atacaaaaacattactctagtcaaagtaac |
230 |
Q |
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| T |
10994506 |
atacaaaaacattactctagtcaaagtaac |
10994535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11006908 - 11006834
Alignment:
| Q |
128 |
gaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaa-taggaacaaagtcaaa |
201 |
Q |
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||||| |||||||||||||||| | || | ||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
11006908 |
gaaactacaaggaaagacaacaaccaaataatcagcgaaaacaacgttcaaaatgaaagtaggaacaaaatcaaa |
11006834 |
T |
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