View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_6 (Length: 578)

Name: NF17836_low_6
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_6
NF17836_low_6
[»] chr3 (25 HSPs)
chr3 (1-381)||(1727242-1727622)
chr3 (396-562)||(1728979-1729146)
chr3 (53-273)||(15669120-15669337)
chr3 (384-530)||(19638499-19638645)
chr3 (211-259)||(13147007-13147055)
chr3 (211-256)||(15841106-15841151)
chr3 (211-259)||(1061431-1061479)
chr3 (211-259)||(12240461-12240509)
chr3 (211-259)||(18004834-18004882)
chr3 (460-519)||(5798564-5798623)
chr3 (460-519)||(18698198-18698257)
chr3 (211-257)||(17015073-17015119)
chr3 (211-259)||(1786772-1786820)
chr3 (211-259)||(4431047-4431095)
chr3 (211-259)||(6493248-6493296)
chr3 (211-259)||(8998853-8998901)
chr3 (211-259)||(9383566-9383614)
chr3 (211-259)||(9984790-9984838)
chr3 (211-259)||(10629850-10629898)
chr3 (211-259)||(11208996-11209044)
chr3 (211-259)||(13264561-13264609)
chr3 (211-259)||(16398924-16398972)
chr3 (211-259)||(29464108-29464156)
chr3 (211-259)||(29936456-29936504)
chr3 (211-259)||(29985610-29985658)
[»] chr8 (10 HSPs)
chr8 (378-539)||(18163042-18163203)
chr8 (381-436)||(17012329-17012384)
chr8 (381-436)||(17544817-17544872)
chr8 (381-436)||(45563795-45563850)
chr8 (211-259)||(3840826-3840874)
chr8 (211-259)||(23790529-23790577)
chr8 (207-276)||(18163341-18163410)
chr8 (211-252)||(21296061-21296102)
chr8 (214-259)||(23802576-23802621)
chr8 (211-259)||(30317662-30317710)
[»] chr7 (16 HSPs)
chr7 (390-519)||(16111062-16111191)
chr7 (382-530)||(16404666-16404814)
chr7 (116-269)||(24832055-24832208)
chr7 (402-537)||(24831751-24831886)
chr7 (401-522)||(27289348-27289469)
chr7 (76-144)||(4447123-4447191)
chr7 (381-436)||(13877021-13877076)
chr7 (380-519)||(14143438-14143577)
chr7 (381-442)||(16312710-16312771)
chr7 (381-430)||(16549220-16549269)
chr7 (381-430)||(16616393-16616442)
chr7 (211-259)||(13177376-13177424)
chr7 (305-363)||(27289231-27289289)
chr7 (381-442)||(33603681-33603742)
chr7 (211-259)||(15880809-15880857)
chr7 (211-259)||(18438473-18438521)
[»] scaffold0758 (1 HSPs)
scaffold0758 (390-538)||(1972-2120)
[»] chr6 (15 HSPs)
chr6 (31-138)||(19220144-19220251)
chr6 (214-259)||(17611499-17611544)
chr6 (207-259)||(9115401-9115453)
chr6 (304-353)||(12349486-12349535)
chr6 (214-259)||(17780873-17780918)
chr6 (381-442)||(19071613-19071674)
chr6 (381-442)||(19446953-19447014)
chr6 (214-259)||(22383858-22383903)
chr6 (211-259)||(13921087-13921135)
chr6 (211-259)||(17055303-17055351)
chr6 (211-259)||(18827270-18827318)
chr6 (211-259)||(25724638-25724686)
chr6 (211-259)||(27501545-27501593)
chr6 (211-259)||(28254480-28254528)
chr6 (211-259)||(28333229-28333277)
[»] chr4 (14 HSPs)
chr4 (381-519)||(39042502-39042640)
chr4 (383-541)||(11451368-11451526)
chr4 (378-522)||(24901753-24901898)
chr4 (381-531)||(17528451-17528601)
chr4 (381-436)||(15867203-15867258)
chr4 (460-541)||(11543209-11543290)
chr4 (383-439)||(17244463-17244519)
chr4 (304-351)||(39042706-39042753)
chr4 (211-259)||(4990701-4990749)
chr4 (211-259)||(5020037-5020085)
chr4 (211-259)||(10298572-10298620)
chr4 (211-259)||(14838963-14839011)
chr4 (211-259)||(15199709-15199757)
chr4 (211-259)||(18755396-18755444)
[»] scaffold0037 (1 HSPs)
scaffold0037 (381-532)||(74894-75045)
[»] chr2 (9 HSPs)
chr2 (378-538)||(26443777-26443926)
chr2 (211-259)||(24804573-24804621)
chr2 (400-519)||(22674296-22674415)
chr2 (381-436)||(28704374-28704429)
chr2 (211-259)||(19302718-19302766)
chr2 (211-259)||(21164869-21164917)
chr2 (211-259)||(24417948-24417996)
chr2 (211-259)||(28724240-28724288)
chr2 (211-259)||(43090521-43090569)
[»] chr1 (6 HSPs)
chr1 (284-381)||(27518805-27518902)
chr1 (211-259)||(19162625-19162673)
chr1 (211-259)||(22652536-22652584)
chr1 (382-436)||(17718756-17718810)
chr1 (211-259)||(7692418-7692466)
chr1 (211-259)||(19185034-19185082)
[»] scaffold0382 (2 HSPs)
scaffold0382 (211-259)||(4227-4275)
scaffold0382 (211-259)||(12610-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (211-259)||(2626-2674)
[»] scaffold0084 (1 HSPs)
scaffold0084 (381-436)||(46193-46248)
[»] scaffold0183 (1 HSPs)
scaffold0183 (381-442)||(7974-8035)
[»] scaffold0047 (2 HSPs)
scaffold0047 (381-442)||(5967-6028)
scaffold0047 (211-259)||(35797-35845)
[»] scaffold0161 (3 HSPs)
scaffold0161 (382-442)||(13243-13303)
scaffold0161 (382-442)||(17916-17976)
scaffold0161 (382-441)||(20854-20913)
[»] scaffold0010 (1 HSPs)
scaffold0010 (211-259)||(112857-112905)
[»] chr5 (11 HSPs)
chr5 (211-259)||(13531066-13531114)
chr5 (211-259)||(23485971-23486019)
chr5 (211-259)||(25182196-25182244)
chr5 (211-259)||(1119090-1119138)
chr5 (211-259)||(19466997-19467045)
chr5 (211-259)||(20554840-20554888)
chr5 (211-259)||(21668877-21668925)
chr5 (211-259)||(23398937-23398985)
chr5 (211-259)||(24944366-24944414)
chr5 (211-259)||(31421690-31421738)
chr5 (211-259)||(34054985-34055033)
[»] scaffold0892 (1 HSPs)
scaffold0892 (211-258)||(1343-1390)
[»] scaffold0388 (1 HSPs)
scaffold0388 (211-259)||(764-812)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1727242 - 1727622
Alignment:
Q  1 agctaaggttcttaacgagtcaaagtcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1727242 agctaaggttcttaacaagtcaaagtcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctgaatagttca 1727341  T
Q  101 aaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  1727342 aaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccacatatcttgaagcctaaagttctgaagaagg 1727441  T
Q  201 aaaagtccttcagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttctatgctacagaaacactttatgggagaaccaacgc 300  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1727442 aaaagtccttcagagctaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttatatgctacagaaacactttatgggagaaccaacgc 1727541  T
Q  301 ttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 381  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1727542 ttcagtcatggtacctggacagtggttactcatgacacatgacaagagaaaagcacattttccaaacattaacactgaaag 1727622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 396 - 562
Target Start/End: Original strand, 1728979 - 1729146
Alignment:
Q  396 acatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacat-aagtcaattttgtcatagt 494  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||    
T  1728979 acatggactattggtaattcttctatctctatcaaaaatgtctggtttgatgatggactgaaacataacctacttaacattaagtcaatgttgtcatagt 1729078  T
Q  495 ggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatgactctaataaatccattgtttt 562  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1729079 ggtgatgaactgatgtttgataagaacatttgcacagtcatcaatgagtctaataaatccattgtttt 1729146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 53 - 273
Target Start/End: Original strand, 15669120 - 15669337
Alignment:
Q  53 atcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtct 152  Q
    ||||||||||||||||| ||||||  |||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  15669120 atcaaatcaaaaccaaagattccaatgtccaaagttctgaatagtccaaaacctaaagctaataagaattcaaggcctaaaacttttaaaccaaaagtct 15669219  T
Q  153 tgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcagaactaaccccaaagaacccatgaatatatgtgtacctaa 252  Q
    | ||||||||||| ||  ||| ||||||||||||||||||   ||||||||| | ||| ||||| ||| |||||| ||||||||| ||||| |||| |||    
T  15669220 tcaatgattctaatccatatagcttgaagcctaaggttct---gaaggaaaaatactttagaacaaacaccaaaggacccatgaaaatatgggtacataa 15669316  T
Q  253 gtctgaaattttctatgctac 273  Q
    |||| ||||||||||||||||    
T  15669317 gtctaaaattttctatgctac 15669337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 384 - 530
Target Start/End: Original strand, 19638499 - 19638645
Alignment:
Q  384 aagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaat 483  Q
    ||||| |||||||  ||||||||  |||| |||||||||||||| || ||||| | ||||| |||| |||| | | |||||||||||| ||||||| |||    
T  19638499 aagatcattggtatgtgaactatacgtaactcttctatctctattaataatgtgtagtttgttgatggactaagacataacctacttagcataagtaaat 19638598  T
Q  484 tttgtcatagtggtgatgaagtgatgtttgataagaacatttgcaca 530  Q
    ||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  19638599 tttgtgatagtggttatgatgtgatgtttgataagaacaattgcaca 19638645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 13147055 - 13147007
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  13147055 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 13147007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 15841151 - 15841106
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtct 256  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  15841151 cagaactaaccccaaaggacccatgaagatatgggtacctaagtct 15841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 1061479 - 1061431
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  1061479 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 1061431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 12240461 - 12240509
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||    
T  12240461 cagaactaacccaaaagaacccatgaagatatgggtacctaaatctgaa 12240509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 18004882 - 18004834
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  18004882 cagaactaaccccaaaggacccatgaagatatgggtacctaaatctgaa 18004834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 5798564 - 5798623
Alignment:
Q  460 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataaga 519  Q
    |||||||| ||| ||| |||||||||||| |||||||  |||||||| ||||||||||||    
T  5798564 ataacctatttagcattagtcaattttgtgatagtggatatgaagtggtgtttgataaga 5798623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 18698198 - 18698257
Alignment:
Q  460 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataaga 519  Q
    |||||||||||| ||| ||||  |||||| |||||||| |||| ||||||||||||||||    
T  18698198 ataacctacttagcattagtcggttttgtgatagtggttatgatgtgatgtttgataaga 18698257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 17015119 - 17015073
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctg 257  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||    
T  17015119 cagaactaaccctaaaggacccatgaagatatgggtacctaagtctg 17015073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 1786772 - 1786820
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  1786772 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 1786820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 4431095 - 4431047
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| ||||||    
T  4431095 cagaactaacctcaaaggacccatgaagatatgggtacctaaatctgaa 4431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 6493248 - 6493296
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  6493248 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 6493296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 8998853 - 8998901
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  8998853 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 8998901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 9383566 - 9383614
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  9383566 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 9383614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 9984790 - 9984838
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  9984790 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 9984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 10629850 - 10629898
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  10629850 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 10629898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 11208996 - 11209044
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  11208996 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 11209044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 13264561 - 13264609
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  13264561 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 13264609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 16398924 - 16398972
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  16398924 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 16398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 29464108 - 29464156
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29464108 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29464156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 29936456 - 29936504
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29936456 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29936504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 29985610 - 29985658
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29985610 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29985658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 539
Target Start/End: Complemental strand, 18163203 - 18163042
Alignment:
Q  378 aaaggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataa 477  Q
    |||||||||||||||||||   ||||||||||||| | || ||||| ||| || ||||| ||||||| |||| || ||| | |||||||||||| |||||    
T  18163203 aaaggcaagattattggtatgagaactattggtaactattttatctttattaataatgtttggtttgttgatggattgagacataacctacttagcataa 18163104  T
Q  478 gtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaat 539  Q
    ||||||||||| ||| |||| |||||||||||||| |||||||||  |||||||| ||||||    
T  18163103 gtcaattttgtgataatggttatgaagtgatgtttaataagaacaactgcacagtaatcaat 18163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 17012384 - 17012329
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  17012384 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 17012329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 17544817 - 17544872
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  17544817 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 17544872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 45563850 - 45563795
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  45563850 ggcaagattattggtacaggaactattggtaactcctctatctctattaacaatgt 45563795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 3840874 - 3840826
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  3840874 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 3840826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 23790577 - 23790529
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23790577 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23790529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 18163410 - 18163341
Alignment:
Q  207 ccttcagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttctatgctacaga 276  Q
    |||||||||  ||||| |||| |||||| || ||||| ||||| |||||||||||| |||||||| ||||    
T  18163410 ccttcagaatcaacccaaaaggacccataaagatatgagtaccgaagtctgaaattgtctatgctgcaga 18163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 21296102 - 21296061
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaa 252  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||    
T  21296102 cagaactaaccccaaaggacccatgaagatatgggtacctaa 21296061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 23802621 - 23802576
Alignment:
Q  214 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23802621 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 30317662 - 30317710
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  30317662 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 30317710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 390 - 519
Target Start/End: Original strand, 16111062 - 16111191
Alignment:
Q  390 attggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtc 489  Q
    ||||||| |||||||||||| || |||||||||||||| || ||||| ||||||| |||| |||| | | |||||||||||| ||| ||||||||||||     
T  16111062 attggtatatgaactattggcaactcttctatctctattaataatgtgtggtttgttgatggacttagacataacctacttagcattagtcaattttgtg 16111161  T
Q  490 atagtggtgatgaagtgatgtttgataaga 519  Q
    |||||||| |||| ||||||||||||||||    
T  16111162 atagtggttatgatgtgatgtttgataaga 16111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 530
Target Start/End: Complemental strand, 16404814 - 16404666
Alignment:
Q  382 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtca 481  Q
    ||||||| |||||  || ||||||||||||| |||| ||||||||| || ||||| ||||| |  ||||| |||||| ||||| |||||| ||| |||||    
T  16404814 gcaagatcattggatcaggaactattggtaactcttttatctctattaataatgtgtggttggtagatagtctgaaacataacttacttagcatcagtca 16404715  T
Q  482 attttgtcatagtggtgatgaagtgatgtttgataagaacatttgcaca 530  Q
    ||||||| |||||||| |||| |||||||||||||||| || |||||||    
T  16404714 attttgtgatagtggttatgatgtgatgtttgataagaccaattgcaca 16404666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 24832208 - 24832055
Alignment:
Q  116 aagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcagaa 215  Q
    ||||| ||||||||  | || |||||| | || ||| |||||||||  ||||  |||| |||||||||||| | | |||| |||||||| ||||| ||||    
T  24832208 aagaaatcaagaccagacacttttaaatctaaggtcctgaatgattaaaagcatcatagcttgaagcctaaaggtatgaaaaaggaaaattcctttagaa 24832109  T
Q  216 ctaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttctatg 269  Q
    |||||||||||| ||||||||| ||||| ||||| | |||||||||||||||||    
T  24832108 ctaaccccaaagtacccatgaaaatatgggtacccacgtctgaaattttctatg 24832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 402 - 537
Target Start/End: Complemental strand, 24831886 - 24831751
Alignment:
Q  402 actattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtgatg 501  Q
    ||||||||||| || ||||||||||| || ||||| | ||| |  |||||||| ||  |||||||||||| |||||||||||||||| ||| |||| |||    
T  24831886 actattggtaactcctctatctctattaataatgtttagttagtagatagactcaagcataacctacttagcataagtcaattttgtgatattggttatg 24831787  T
Q  502 aagtgatgtttgataagaacatttgcacagtcatca 537  Q
    ||||  |||||||||||||||  |||||| ||||||    
T  24831786 aagtagtgtttgataagaacaactgcacaatcatca 24831751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 27289348 - 27289469
Alignment:
Q  401 aactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtgat 500  Q
    |||||||||||| ||||||||||||||  | ||| | ||||||| |||| |||| | | |||| ||||||| |||||||||||||||| ||| |||  ||    
T  27289348 aactattggtaactcttctatctctattcataatatttggtttgttgatggactaagacataatctacttagcataagtcaattttgtgataatggatat 27289447  T
Q  501 gaagtgatgtttgataagaaca 522  Q
    || || ||||||||||||||||    
T  27289448 gatgtaatgtttgataagaaca 27289469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 4447191 - 4447123
Alignment:
Q  76 agagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaacc 144  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||  | |||||||||||||    
T  4447191 agagcccaaggttctaaagagttcaaaacctaaatctaagaagaattcaagatatgaaacctttaaacc 4447123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 13877076 - 13877021
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| || |||||    
T  13877076 ggcaagattattggtacatgaactattggtaactcctctatctctattaataatgt 13877021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 519
Target Start/End: Complemental strand, 14143577 - 14143438
Alignment:
Q  380 aggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagt 479  Q
    ||||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| ||| | |  ||| | ||  || |||||||||| |  || |||    
T  14143577 aggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtgtggctggtagatggtctttaacataacctactaagtattagt 14143478  T
Q  480 caattttgtcatagtggtgatgaagtgatgtttgataaga 519  Q
    ||||||||| ||| |||| |||| |||||||||| |||||    
T  14143477 caattttgtgataatggttatgatgtgatgtttggtaaga 14143438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 16312710 - 16312771
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || |||||||||||    
T  16312710 ggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtatggtt 16312771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 16549220 - 16549269
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaa 430  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  16549220 ggcaagatcattggtacaagaactattggtaactcctctatctctatcaa 16549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 16616442 - 16616393
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaa 430  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  16616442 ggcaagatcattggtacaagaactattggtaactcctctatctctatcaa 16616393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 13177376 - 13177424
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13177376 cagaactaaccctaaaggacccatgaagatatgggtacctaagtctgaa 13177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 27289231 - 27289289
Alignment:
Q  305 gtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttcc 363  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| ||||    
T  27289231 gtcatggtacttggacagtggttgctcgtgtcacatgacaggagaaaagcctatgttcc 27289289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 33603742 - 33603681
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||||||||||||| ||  || |||||||| ||||| ||||| |||||    
T  33603742 ggcaagatcattggtacatgaactattgatagctcctctatctccatcaataatgtgtggtt 33603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 15880809 - 15880857
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  15880809 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 15880857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 18438521 - 18438473
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||  ||||||||| ||||| |||||||||||||||    
T  18438521 cagaactaacccaaaacgacccatgaagatatgggtacctaagtctgaa 18438473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 390 - 538
Target Start/End: Complemental strand, 2120 - 1972
Alignment:
Q  390 attggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtc 489  Q
    ||||||| ||||||||||||||| |||||||||||||| || ||||| ||||||| |||| |||| | | |||||||||||||||| ||||| ||||||     
T  2120 attggtatatgaactattggtaactcttctatctctattaataatgtgtggtttgttgatggacttagacataacctacttaacattagtcagttttgtg 2021  T
Q  490 atagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaa 538  Q
    |||||||| |||| |||| ||||| ||||| ||  |||||||| |||||    
T  2020 atagtggttatgatgtgacgtttggtaagagcaactgcacagtaatcaa 1972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 19220144 - 19220251
Alignment:
Q  31 ggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacct 130  Q
    ||||| ||||||||||  ||| | ||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| ||||||||||||| |     
T  19220144 ggcttcagagtctaagtttctgaacaaatcaaaaccaaatacttcagagtccaaggttctgaagagttcaaaacctaaagctatgaagaattcaagatca 19220243  T
Q  131 aaaacctt 138  Q
    ||||||||    
T  19220244 aaaacctt 19220251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 17611499 - 17611544
Alignment:
Q  214 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  17611499 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 17611544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 9115401 - 9115453
Alignment:
Q  207 ccttcagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  9115401 ccttcagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 9115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 12349535 - 12349486
Alignment:
Q  304 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaaag 353  Q
    ||||||||||| || ||||||||| |||| ||||||||||| ||||||||    
T  12349535 agtcatggtacctgtacagtggttgctcacgacacatgacaggagaaaag 12349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 17780918 - 17780873
Alignment:
Q  214 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17780918 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 19071613 - 19071674
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| |||||    
T  19071613 ggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtgtggtt 19071674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 19447014 - 19446953
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| |||||    
T  19447014 ggcaagatcattggtacaagaactattggtaactcctctatctcaattaataatgtgtggtt 19446953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 22383903 - 22383858
Alignment:
Q  214 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  22383903 aactaacctcaaaggacccatgaaaatatgggtacctaagtctgaa 22383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 13921135 - 13921087
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  13921135 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 13921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 17055351 - 17055303
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||| ||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17055351 cagagctaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17055303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 18827270 - 18827318
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| |||||  ||||||||||||||    
T  18827270 cagaactaacccaaaaggacccatgaagatatggatacctaagtctgaa 18827318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 25724638 - 25724686
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  25724638 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 25724686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 27501593 - 27501545
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  27501593 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 27501545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 28254480 - 28254528
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  28254480 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 28254528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 28333229 - 28333277
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  28333229 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 28333277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 519
Target Start/End: Complemental strand, 39042640 - 39042502
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 480  Q
    |||||||| |||||||||||||||||| |||| || ||||||||||| || ||||| ||||| |  ||| | || | | |||||||||||| ||| ||||    
T  39042640 ggcaagatcattggtacatgaactattagtaactcctctatctctattaataatgtgtggttggtagatggtcttagacataacctacttagcattagtc 39042541  T
Q  481 aattttgtcatagtggtgatgaagtgatgtttgataaga 519  Q
    | |||||| |||||||| |||| ||||||||||||||||    
T  39042540 agttttgtgatagtggttatgatgtgatgtttgataaga 39042502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 541
Target Start/End: Original strand, 11451368 - 11451526
Alignment:
Q  383 caagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaa 482  Q
    ||||||| |||||||  | ||||||||||| |||| |||||| ||||| |||||||| || | | || |||| | | ||||||||||||  |||||||||    
T  11451368 caagattgttggtacggggactattggtaactcttttatctcaatcaataatgtatgcttagtttatggactaagacataacctacttattataagtcaa 11451467  T
Q  483 ttttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatga 541  Q
    |||||| |||||||  || |||||  ||||||||||||||  || ||| ||||||||||    
T  11451468 ttttgtgatagtgggtataaagtggagtttgataagaacacatgtacaatcatcaatga 11451526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 378 - 522
Target Start/End: Original strand, 24901753 - 24901898
Alignment:
Q  378 aaaggcaagattattggtacatgaactattggtaattctt-ctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacata 476  Q
    |||||||||||||||| |||||  ||||||||||||  || |||||||||| || ||||| ||||| | |||| |||| ||| | ||| |||||| |  |    
T  24901753 aaaggcaagattattgttacatagactattggtaataattcctatctctatgaataatgtttggttagttgatggactaaaacaaaacttacttatctga 24901852  T
Q  477 agtcaattttgtcatagtggtgatgaagtgatgtttgataagaaca 522  Q
    | |||||||||| |||||||| ||||| |||||||| |||||||||    
T  24901853 aatcaattttgtgatagtggttatgaaatgatgtttaataagaaca 24901898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 531
Target Start/End: Original strand, 17528451 - 17528601
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 480  Q
    ||||| || |||||||  |||||| ||||||| |||| ||||||||| || ||||| ||||||  |||| |||  | |||||| ||||||| ||| ||||    
T  17528451 ggcaaaatcattggtatgtgaactgttggtaactcttatatctctattaataatgtgtggtttattgatggacatagatataaactacttagcattagtc 17528550  T
Q  481 aattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacag 531  Q
    ||||||||  ||||||| |||| ||||||||| ||| |||||  |||||||    
T  17528551 aattttgtggtagtggttatgatgtgatgttttatacgaacaactgcacag 17528601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 15867203 - 15867258
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||||||||||||||||| || | ||||||||| || |||||    
T  15867203 ggcaagattattggtacatgaactattggtaactcatttatctctattaataatgt 15867258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 541
Target Start/End: Complemental strand, 11543290 - 11543209
Alignment:
Q  460 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatga 541  Q
    ||||||||||||  ||||||||||||||| |||||||  || |||||  ||||||||||||||  || ||| ||||||||||    
T  11543290 ataacctacttattataagtcaattttgtgatagtgggtataaagtggagtttgataagaacacatgtacaatcatcaatga 11543209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 17244519 - 17244463
Alignment:
Q  383 caagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatg 439  Q
    |||||| ||||||||||||||||||||||| || |||||||| || || ||||||||    
T  17244519 caagatcattggtacatgaactattggtaactcctctatctcaattaataatgtatg 17244463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 39042753 - 39042706
Alignment:
Q  304 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaa 351  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  39042753 agtcatggtacctggacagtggttgctcacgacacatgacaagagaaa 39042706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 4990701 - 4990749
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  4990701 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 4990749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 5020085 - 5020037
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  5020085 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 5020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 10298620 - 10298572
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  10298620 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 10298572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 14838963 - 14839011
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  14838963 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 14839011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 15199709 - 15199757
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  15199709 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 15199757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 18755396 - 18755444
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  18755396 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 18755444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 532
Target Start/End: Complemental strand, 75045 - 74894
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 480  Q
    |||||||||||||||||| |||||| |||||| || ||||||||||| || ||||| ||||| |  ||| | || ||| ||||||| ||||  || ||||    
T  75045 ggcaagattattggtacaggaactactggtaactcctctatctctattaataatgtgtggttggtagatggtctaaaacataacctgcttagtatcagtc 74946  T
Q  481 aattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagt 532  Q
    | |||||| ||| |||| |||| |||||||||||||||| ||  ||||||||    
T  74945 atttttgtgataatggttatgatgtgatgtttgataagaccaactgcacagt 74894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 538
Target Start/End: Complemental strand, 26443926 - 26443777
Alignment:
Q  378 aaaggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataa 477  Q
    |||||| | ||||||||||  || ||||||||||||||||||||||| ||||| ||||| ||||||| |||| |||| | | ||||||||||            
T  26443926 aaaggctaaattattggtatgtggactattggtaattcttctatctcaatcaataatgtctggtttggtgatggacttagacataacctact-------- 26443835  T
Q  478 gtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaa 538  Q
     |||||||| | |||||||| ||||| || ||||||  ||||||||||||||| |||||||    
T  26443834 -tcaattttatgatagtggttatgaaatggtgtttg--aagaacatttgcacattcatcaa 26443777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 24804573 - 24804621
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  24804573 cagaactaaccccaaagaacccatgaagatatgggtacctaagtctgaa 24804621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 519
Target Start/End: Complemental strand, 22674415 - 22674296
Alignment:
Q  400 gaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtga 499  Q
    ||||||||| ||| |||||||||||||| || ||||| ||||||| |||| ||||   | ||||||| |||| ||| ||| | |||||| ||||| || |    
T  22674415 gaactattgataactcttctatctctattaataatgtgtggtttgttgatggactttgacataacctgcttagcattagtaagttttgtgatagtagtta 22674316  T
Q  500 tgaagtgatgtttgataaga 519  Q
    ||| ||||||||||||||||    
T  22674315 tgatgtgatgtttgataaga 22674296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 28704374 - 28704429
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  28704374 ggcaagatcattggtacaagaactattggtaattcctctatctctattaataatgt 28704429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 19302718 - 19302766
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| || |||||| ||||| |||||||||||||||    
T  19302718 cagaactaacccaaaaggactcatgaagatatgggtacctaagtctgaa 19302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 21164869 - 21164917
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  21164869 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 21164917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 24417948 - 24417996
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  24417948 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 24417996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 28724240 - 28724288
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  28724240 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 28724288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 43090569 - 43090521
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  43090569 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 43090521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 27518805 - 27518902
Alignment:
Q  284 tatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 381  Q
    |||||||||| ||| | | |||||||||||| |||||||| ||| |||  || ||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  27518805 tatgggagaatcaaagttccagtcatggtacctgaacagtagttgctcccgatacatgacaatagaaaagcatatgttccaaaccctaacattgaaag 27518902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 19162625 - 19162673
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  19162625 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 19162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 22652584 - 22652536
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  22652584 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 22652536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 17718810 - 17718756
Alignment:
Q  382 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    ||||||| ||||||||||||| ||||||||| || ||||||||||| || |||||    
T  17718810 gcaagatcattggtacatgaattattggtaactcctctatctctattaataatgt 17718756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 7692418 - 7692466
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  7692418 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 7692466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 19185082 - 19185034
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  19185082 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 19185034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 4227 - 4275
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4227 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 4275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 12610 - 12658
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  12610 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 12658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 2626 - 2674
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  2626 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 2674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 46248 - 46193
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 436  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  46248 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 46193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 8035 - 7974
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||| || ||||| |||||    
T  8035 ggcaagatcattggtacaggaactattggtaactcctctatctctattaataatgtgtggtt 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 6028 - 5967
Alignment:
Q  381 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||| || || ||||| |||||    
T  6028 ggcaagatcattggtacaggaactattggtaactcttctatctcaattaataatgtgtggtt 5967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 35797 - 35845
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  35797 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 35845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 13243 - 13303
Alignment:
Q  382 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| |||||    
T  13243 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggtt 13303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 17916 - 17976
Alignment:
Q  382 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 442  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| |||||    
T  17916 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggtt 17976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 441
Target Start/End: Original strand, 20854 - 20913
Alignment:
Q  382 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggt 441  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| ||||    
T  20854 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggt 20913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 112905 - 112857
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  112905 cagaactaacccaaaagtacccatgaagatatgggtacctaagtctgaa 112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 13531114 - 13531066
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13531114 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 13531066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 23486019 - 23485971
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  23486019 cagaactaaccccaaaggacacatgaagatatgggtacctaagtctgaa 23485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 25182196 - 25182244
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  25182196 cagaactaaccccaaaggacccatgaagatatgcgtacctaagtttgaa 25182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 1119138 - 1119090
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  1119138 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 1119090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 19466997 - 19467045
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  19466997 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 19467045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 20554840 - 20554888
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  20554840 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 20554888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 21668877 - 21668925
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| |||||  ||||||||||||||    
T  21668877 cagaactaacccaaaaggacccatgaagatatggttacctaagtctgaa 21668925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 23398937 - 23398985
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  23398937 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 23398985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 24944414 - 24944366
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  24944414 cagaactaacccaaaaggacccatgaagatatgagtacctaaatctgaa 24944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 31421690 - 31421738
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  31421690 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 31421738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 34054985 - 34055033
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  34054985 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 34055033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 1343 - 1390
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctga 258  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  1343 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctga 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 812 - 764
Alignment:
Q  211 cagaactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 259  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  812 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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