View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_65 (Length: 226)
Name: NF17836_low_65
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 12691823 - 12691616
Alignment:
| Q |
18 |
tttttctttatctgttgatgttttgtttaagaatgataaataagaaaaagaaatctttgtctcaacatttttaaaattcgagaagggttaccaaatgtag |
117 |
Q |
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| T |
12691823 |
tttttctttatctgttgatgttttgtttaagag-gataaataagaaaaagaaatctttgattcaacatttttaaaattcgagaagggttaccaaatgtag |
12691725 |
T |
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| Q |
118 |
gtagcattacaaaaataaatatgagtttagaaattatttccacatagaagatgaacatttgctgttagtgttcttgctgaaatagtattccctttaccct |
217 |
Q |
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| T |
12691724 |
gtagcatgacaaaaataaatatgagtttagaaattattaccacatagaagatgaacatttgctgttagtgttcttgctgaaatagtattccctttaccct |
12691625 |
T |
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| Q |
218 |
ttttcttct |
226 |
Q |
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| T |
12691624 |
ttttcttct |
12691616 |
T |
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