View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_66 (Length: 220)

Name: NF17836_low_66
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_66
NF17836_low_66
[»] scaffold0013 (2 HSPs)
scaffold0013 (16-201)||(104730-104915)
scaffold0013 (16-205)||(127379-127568)
[»] chr4 (18 HSPs)
chr4 (16-201)||(24050690-24050875)
chr4 (16-205)||(2479179-2479368)
chr4 (19-199)||(29968320-29968500)
chr4 (17-201)||(41851018-41851202)
chr4 (19-194)||(47427933-47428108)
chr4 (55-201)||(18000429-18000575)
chr4 (19-201)||(10466778-10466961)
chr4 (159-205)||(21580978-21581024)
chr4 (157-201)||(36639643-36639687)
chr4 (157-201)||(47769249-47769293)
chr4 (157-201)||(12795643-12795687)
chr4 (159-201)||(23952270-23952312)
chr4 (157-203)||(32962718-32962764)
chr4 (157-201)||(8478664-8478708)
chr4 (165-205)||(32010628-32010668)
chr4 (29-114)||(50232005-50232090)
chr4 (25-84)||(47965941-47966000)
chr4 (165-201)||(48076665-48076700)
[»] scaffold0059 (1 HSPs)
scaffold0059 (16-201)||(71150-71335)
[»] chr5 (18 HSPs)
chr5 (16-201)||(14164357-14164542)
chr5 (16-201)||(19123254-19123439)
chr5 (16-162)||(31486178-31486324)
chr5 (26-149)||(23141144-23141267)
chr5 (19-164)||(31487192-31487336)
chr5 (140-201)||(7129080-7129141)
chr5 (157-205)||(7672890-7672938)
chr5 (158-197)||(35159997-35160036)
chr5 (157-198)||(10409818-10409859)
chr5 (29-114)||(21000748-21000833)
chr5 (157-201)||(41092418-41092462)
chr5 (17-84)||(11298724-11298791)
chr5 (159-198)||(26522867-26522906)
chr5 (158-197)||(43394720-43394759)
chr5 (165-201)||(23141269-23141305)
chr5 (157-200)||(13034788-13034831)
chr5 (157-200)||(13104761-13104804)
chr5 (17-108)||(37340100-37340188)
[»] chr8 (15 HSPs)
chr8 (27-199)||(604018-604190)
chr8 (27-201)||(44434395-44434569)
chr8 (16-201)||(30436993-30437178)
chr8 (16-201)||(1199601-1199785)
chr8 (24-199)||(44429635-44429810)
chr8 (25-201)||(1851139-1851315)
chr8 (17-201)||(1852277-1852460)
chr8 (24-199)||(44433371-44433545)
chr8 (81-201)||(31247965-31248085)
chr8 (84-201)||(44014955-44015072)
chr8 (159-205)||(3458897-3458943)
chr8 (157-201)||(32063110-32063154)
chr8 (158-200)||(37197445-37197487)
chr8 (157-201)||(3990693-3990737)
chr8 (158-205)||(42045956-42046004)
[»] chr3 (18 HSPs)
chr3 (16-201)||(53047063-53047248)
chr3 (17-201)||(17757755-17757939)
chr3 (17-201)||(19059075-19059259)
chr3 (17-201)||(2702218-2702401)
chr3 (157-201)||(25916844-25916888)
chr3 (157-205)||(43017564-43017612)
chr3 (164-205)||(11454681-11454722)
chr3 (29-114)||(21799949-21800034)
chr3 (157-201)||(836967-837011)
chr3 (157-201)||(35560548-35560592)
chr3 (151-201)||(47501308-47501358)
chr3 (157-201)||(23777141-23777185)
chr3 (157-201)||(36642890-36642934)
chr3 (161-201)||(46452478-46452518)
chr3 (165-205)||(11454057-11454097)
chr3 (165-201)||(24365853-24365889)
chr3 (157-201)||(37760776-37760819)
chr3 (165-201)||(45514375-45514411)
[»] chr1 (14 HSPs)
chr1 (16-201)||(38685500-38685684)
chr1 (16-199)||(5429403-5429590)
chr1 (16-201)||(23480810-23480991)
chr1 (19-183)||(21882557-21882721)
chr1 (157-201)||(318903-318947)
chr1 (157-201)||(1155825-1155869)
chr1 (157-201)||(44099374-44099418)
chr1 (157-201)||(48411733-48411777)
chr1 (157-199)||(42491748-42491790)
chr1 (157-201)||(24595507-24595551)
chr1 (157-201)||(27296616-27296660)
chr1 (157-201)||(28949657-28949701)
chr1 (165-201)||(51114209-51114245)
chr1 (16-101)||(9825677-9825762)
[»] chr7 (24 HSPs)
chr7 (17-201)||(9141141-9141325)
chr7 (16-201)||(16375588-16375773)
chr7 (19-183)||(22967907-22968071)
chr7 (16-162)||(11642313-11642459)
chr7 (84-201)||(6250271-6250388)
chr7 (16-146)||(45286514-45286648)
chr7 (110-201)||(35125357-35125448)
chr7 (112-199)||(48639170-48639257)
chr7 (148-201)||(45418449-45418502)
chr7 (27-119)||(45418502-45418592)
chr7 (148-199)||(16673790-16673841)
chr7 (148-199)||(17648158-17648209)
chr7 (157-201)||(2852979-2853023)
chr7 (157-205)||(4681385-4681433)
chr7 (157-201)||(12140620-12140664)
chr7 (157-201)||(9396257-9396301)
chr7 (16-72)||(48639478-48639534)
chr7 (29-114)||(18415388-18415473)
chr7 (159-201)||(16362325-16362367)
chr7 (157-201)||(2354192-2354236)
chr7 (157-201)||(4680664-4680708)
chr7 (157-201)||(22773670-22773713)
chr7 (173-201)||(5553724-5553752)
chr7 (165-201)||(30991579-30991615)
[»] chr6 (7 HSPs)
chr6 (17-201)||(1394113-1394297)
chr6 (19-201)||(17905628-17905810)
chr6 (102-201)||(29202633-29202732)
chr6 (157-201)||(4810832-4810876)
chr6 (157-201)||(25068486-25068530)
chr6 (157-201)||(9829216-9829260)
chr6 (17-69)||(15298175-15298227)
[»] scaffold1155 (1 HSPs)
scaffold1155 (18-201)||(632-815)
[»] scaffold0345 (1 HSPs)
scaffold0345 (18-201)||(9402-9585)
[»] scaffold0105 (1 HSPs)
scaffold0105 (18-201)||(29395-29578)
[»] chr2 (10 HSPs)
chr2 (55-201)||(20639957-20640103)
chr2 (157-201)||(627877-627921)
chr2 (157-201)||(6348367-6348411)
chr2 (157-201)||(12896192-12896236)
chr2 (157-201)||(29550624-29550668)
chr2 (158-201)||(44543512-44543555)
chr2 (159-201)||(44256945-44256987)
chr2 (157-201)||(12898529-12898573)
chr2 (165-201)||(19640421-19640457)
chr2 (165-201)||(19839014-19839050)
[»] scaffold0240 (1 HSPs)
scaffold0240 (157-200)||(13552-13595)
[»] scaffold0018 (1 HSPs)
scaffold0018 (159-201)||(163537-163579)
[»] scaffold0320 (1 HSPs)
scaffold0320 (157-199)||(14345-14387)
[»] scaffold0504 (1 HSPs)
scaffold0504 (165-199)||(1487-1521)


Alignment Details
Target: scaffold0013 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 104730 - 104915
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||| |||||| ||||||    
T  104730 cagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatataaggaagtatttctcaatgtgtgatga 104829  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  104830 aactacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatattttca 104915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 127379 - 127568
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| ||||||    
T  127379 cagagaaggactaaagatattgatcactgacgaagatggtgaagataccaatataacgtctaatgtcgtatatgaggaagtatttcgcaatgtgtgatga 127478  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    |||||||| || ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  127479 aactacatgccaatgtactaaaatttttatatttcttttaccgaattattgataggattaccgaattttcttttataatattttcatatt 127568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 24050690 - 24050875
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||||||    
T  24050690 cagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtaacatctaatgtcgtatatgaggaagtattttgtaatgtgtgatga 24050789  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  24050790 aactacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaatattcttttataatattttca 24050875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 2479368 - 2479179
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| | ||||   ||||||||| |||||||||||||||||||||||    
T  2479368 cagagaatgactaaagatattgattactgatgaagatggtgaagatactaatgtaacgtctaattctgtatatgagaaagtatttcgcaatgtatgatga 2479269  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    |||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2479268 aactacatgccaatgtactaaaattttcatatttcttttaccaaattattgataggattaccgaattttcttttataacattttcatatt 2479179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 29968320 - 29968500
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| ||||||| |||||||||||||||||||||||||||||||  |||||||| | ||||| |||||||||||||||||||| |||||| ||||||||     
T  29968320 agaaggactaaaaatattgatcactgatgaagatggtgaagatactaatgtaacgtctaatgccgtatatgaggaagtatttcacaatgtgtgatgaaaa 29968419  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  29968420 tacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattatcaaattttcttttataatatttt 29968500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 41851202 - 41851018
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatc-aatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| | |||||||| | ||||||| |||||  |||||||||||||||||| ||||||    
T  41851202 agagaaggactaaagatat-gatcactgatgaagatggtgaagataaccaatgtaacgtctaatgtcatatattgggaagtatttcgcaatgtgtgatga 41851104  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||| ||| || |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  41851103 aactgcatgccaatgtactaaaaatttcatatttcttttaccgaattattgataatattaccgaattttcttttataatattttca 41851018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 47428108 - 47427933
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| ||||| |||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||||||| ||||||||  |||||| |||||||||    
T  47428108 agaaggactatagatattgatcactgatgaagatggtgaagatactaatgtaacatctaacgtcgtatatgagaaagtattttacaatgtgtgatgaaac 47428009  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataat 194  Q
    ||||| || |||||||||||| || |||||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  47428008 tacatgccaatgtactaaaaaatttatatttcttttaccgaattattgatagtattacagaattttcttttataat 47427933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 18000575 - 18000429
Alignment:
Q  55 tgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttctttt 154  Q
    |||||||| ||||||||| | ||||||| ||||||||||||||||| ||||| | |||||||||||||| || |||||||||||||||||||||||||||    
T  18000575 tgaagataccaatgtaacgtctaatgtcttatatgaggaagtattttgcaatttgtgatgaaactacatgccaatgtactaaaaatttcatatttctttt 18000476  T
Q  155 atcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  18000475 accgaattattgataggattaccgaattttcttttataatattttca 18000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 10466778 - 10466961
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| |||||||||||||||| |||| |||||||| |||| |||  |||||||| | ||| ||||||||||||||||||||| ||||||| |||||||||    
T  10466778 agaaggactaaagatattgatgactggtgaagatgatgaaaatactaatgtaacgtctaacgtcgtatatgaggaagtatttagcaatgtgtgatgaaac 10466877  T
Q  119 tacataccgatgtact-aaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
     ||||  | ||||| | |||||  | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  10466878 aacatgtcaatgtaataaaaaaaattatatttcttttaccgaattattgataggattaccgaattttgttttaaaatattttca 10466961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 21581024 - 21580978
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21581024 aattattgataggattaccgaattttcttttataatattttcatatt 21580978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 36639643 - 36639687
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36639643 cgaattattgataggattaccgaattttcttttataatattttca 36639687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 47769249 - 47769293
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47769249 cgaattattgataggattaccgaattttcttttataatattttca 47769293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 12795687 - 12795643
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  12795687 cgaattattgatatgattaccgaattttcttttataatattttca 12795643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 23952312 - 23952270
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  23952312 aattattgataggattaccgaattttcttttgtaatattttca 23952270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 32962764 - 32962718
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttcata 203  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||    
T  32962764 cgaattattgataggattaacaaattttcttttataatattttcata 32962718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 8478708 - 8478664
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  8478708 cgaattattgatatgattatcgaattttcttttataatattttca 8478664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 32010668 - 32010628
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttcatatt 205  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  32010668 tgataggattatcgaattttcttttataatattttcatatt 32010628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 50232090 - 50232005
Alignment:
Q  29 aagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatg 114  Q
    ||||||||||| || |||||||||||||| || |  ||| | |||| |||||| || ||||||||||||||||| ||||| |||||    
T  50232090 aagatattgattaccgatgaagatggtgatgacacaaatctgacatctaatgtggtgtatgaggaagtatttcgaaatgtctgatg 50232005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 47966000 - 47965941
Alignment:
Q  25 actaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgt 84  Q
    ||||||||||||||| ||| |||||||||||||||||||  |||| |||| |||| ||||    
T  47966000 actaaagatattgataactaatgaagatggtgaagatattgatgtgacatctaatatcgt 47965941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 48076665 - 48076700
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||||| |||||||||||||||    
T  48076665 tgataggattaccgaattttc-tttataatattttca 48076700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 71335 - 71150
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||| |||||| ||||||    
T  71335 cagagaaagactaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtcatatatgaggaagtatttcacaatgtgtgatga 71236  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  71235 aactacatgccaatgtactaaaaatttcatatttcttttactgaattattgataggattaccgaattttcttttataatattttca 71150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 14164542 - 14164357
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||| ||||||    
T  14164542 cagagaaggactaaagatattgatcgctgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaagtattttgcaatgtgtgatga 14164443  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  14164442 aactacatgccaatgtactaaaaatttcatatttcttttaccgaattattgatatgattaccgaattttcttttataatattttca 14164357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 19123254 - 19123439
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||| ||||||    
T  19123254 cagagaaggactaaagatattgatcattgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaagtatttcacaatgtgtgatga 19123353  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||  | |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  19123354 aactacatgtcaatgtactaaaaatttcatatttcttttaccgaattattgataggatcgccgaattttcttttataatattttca 19123439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 31486324 - 31486178
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  | ||| ||||||||||||||||||||| ||||||| ||||||    
T  31486324 cagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtaatgtctaacgtcgtatatgaggaagtattttgcaatgtgtgatga 31486225  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaatt 162  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||    
T  31486224 aactacatgccaatgtactaaaaatttcatatttcttttaccgaatt 31486178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 23141144 - 23141267
Alignment:
Q  26 ctaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacatac 125  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||| |    
T  23141144 ctaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaactacatgc 23141243  T
Q  126 cgatgtactaaaaatttcatattt 149  Q
    | | ||| ||||||||||||||||    
T  23141244 caacgtattaaaaatttcatattt 23141267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 31487336 - 31487192
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||| ||||||||||||||||| ||||||  ||||||||    
T  31487336 agaaggactaaagatattgatcactgatgaagatggtgaag-taccaatgtaacatctaacgtcgcatatgaggaagtatttcacaatgtgcgatgaaac 31487238  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattat 164  Q
    ||||| || |||||||||||||||||||||| ||||| | ||||||    
T  31487237 tacatgccaatgtactaaaaatttcatatttattttaccaaattat 31487192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 7129080 - 7129141
Alignment:
Q  140 tttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7129080 tttcatatttcttttaccgaattattgataggattaccgaattttcttttataatattttca 7129141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 7672938 - 7672890
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7672938 cgaattattgatagaattaccgaattttcttttataatattttcatatt 7672890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 35159997 - 35160036
Alignment:
Q  158 gaattattgataggattaccgaattttcttttataatatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35159997 gaattattgataggattaccgaattttcttttataatatt 35160036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 10409818 - 10409859
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattt 198  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  10409818 cgaattattgatagaattaccgaattttcttttataatattt 10409859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 21000833 - 21000748
Alignment:
Q  29 aagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatg 114  Q
    |||||||||||||| |||||||||||||| || |  ||| | |||| |||||| || ||||||||||||||||| ||||| |||||    
T  21000833 aagatattgatcaccgatgaagatggtgatgacacaaatctgacatctaatgtggtgtatgaggaagtatttcgaaatgtctgatg 21000748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 41092462 - 41092418
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  41092462 cgaattattgatatgattacagaattttcttttataatattttca 41092418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 11298791 - 11298724
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgt 84  Q
    |||||| |||||||||||||||| ||| ||||||| |||||||||||  |||| |||| |||||||||    
T  11298791 agagaaggactaaagatattgataactaatgaagacggtgaagatattgatgtgacatataatgtcgt 11298724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 26522906 - 26522867
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattt 198  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  26522906 aattattgataggattaccaaattttcttttataatattt 26522867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 43394759 - 43394720
Alignment:
Q  158 gaattattgataggattaccgaattttcttttataatatt 197  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  43394759 gaattattgattggattaccgaattttcttttataatatt 43394720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 23141269 - 23141305
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23141269 tgatagaattaccgaattttcttttataatattttca 23141305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 13034831 - 13034788
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttc 200  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||    
T  13034831 cgaattattgagatgattacctaattttcttttataatattttc 13034788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 13104804 - 13104761
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttc 200  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||    
T  13104804 cgaattatcgatatgattacctaattttcttttataatattttc 13104761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 37340100 - 37340188
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgt 108  Q
    |||||| |||| ||||||||||| ||| |||||||||   |||||||  |||| |||| ||||||||| ||| | ||||||||||| |||||    
T  37340100 agagaaggactgaagatattgataacttatgaagatg---aagatattgatgtgacatctaatgtcgtgtataaagaagtatttcgaaatgt 37340188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 604190 - 604018
Alignment:
Q  27 taaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacatacc 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  604190 taaagatattgatcactgatgaagatggtgaagataccaatgtaacatctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaactacatgcc 604091  T
Q  127 gatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
     |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  604090 aatgtactaaatatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatatttt 604018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 44434395 - 44434569
Alignment:
Q  27 taaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacatacc 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||| ||    
T  44434395 taaagatattgatcactgatgaagatgatgaagatatcaatgtaacatctaacgtcgtatatgaagaagtatttcgcaatgtgtgatgaaactacatccc 44434494  T
Q  127 gatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
     ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  44434495 aatgtactaaaaatttcacatttcttttaccgaattattgataggattaccgaatttttttttataatattttca 44434569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 30437178 - 30436993
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||| | ||||||||||| ||||||||| ||||||||| | |||||| ||||||||| ||||||||| |||||| ||||||    
T  30437178 cagagaaggactaaagatattgaccgctgatgaagatagtgaagataccaatgtaacgtctaatgttgtatatgagaaagtatttcacaatgtgtgatga 30437079  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30437078 aactacatgccgatgtactaaagatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatattttca 30436993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 1199601 - 1199785
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||| | ||||||    
T  1199601 cagagaagtactaaagatattgatcactgatgaagatggtgaagataccaatgtaatgtctaatgtcgtatatgaggaagtatttcgcaatatgtgatga 1199700  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || ||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  1199701 aactacatgccaatgtact-aaaatttcatatttcttttaccgaattattgatagaattaccaaattttcttttataatattttca 1199785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 44429635 - 44429810
Alignment:
Q  24 gactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacat 123  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||| | ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  44429635 gactaaagatattgatcattgataaagatggtgaagataccaatgtaacgtctaatgtcgtgtatgaagaagtatttcgcaatgtgtgatgaaactacat 44429734  T
Q  124 accgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
     || | ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  44429735 gccaaggtactaaaaatttcatatttcttttactgaattattgataggattaccgaaatttcttttataatatttt 44429810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 1851139 - 1851315
Alignment:
Q  25 actaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacata 124  Q
    |||||||||||||||  ||||||||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||||||||| ||||||||||||||     
T  1851139 actaaagatattgatatctgatgaagatggtgaagataccaatgtgacatctaacgccgtatatgaggaagtatttcgcaatgtgtgatgaaactacatg 1851238  T
Q  125 ccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    || |||||||| || |||||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||    
T  1851239 ccaatgtactagaattttcatatttcttttaccggattattgttaggattaccgaattttcatttataatattttca 1851315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 1852277 - 1852460
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  1852277 agagaaggactaaagatattgaacactaatgaagatggtgaagataccaatgtgacatctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaa 1852376  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||| || ||||||||||| |||||| ||| ||||| || ||||||| |||||||||||||||||| |||||||||||||||    
T  1852377 actacatgccaatgtactaaaattttcat-ttttttttaccggattattgttaggattaccgaattttcatttataatattttca 1852460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 44433371 - 44433545
Alignment:
Q  24 gactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacat 123  Q
    ||||||||||||| |||| ||||| ||| |||||||||| ||| ||||| | ||||||||| ||||| ||| ||||| ||||||| ||||||||||||||    
T  44433371 gactaaagatattaatcattgatggaga-ggtgaagataccaaggtaacgtctaatgtcgtgtatgaagaaatattttgcaatgtgtgatgaaactacat 44433469  T
Q  124 accgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
      | |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44433470 gtcaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaaatttcttttataatatttt 44433545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 31248085 - 31247965
Alignment:
Q  81 tcgtatatgaggaagtatttcgcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaa 180  Q
    |||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||| |||||||||| ||||| | ||||||||||||||||||| ||    
T  31248085 tcgtatatgaggaagtattttgcaatgtgtgatgaaactacatgcctatgtactaaaattttcatattttttttaccaaattattgataggattaccaaa 31247986  T
Q  181 ttttcttttataatattttca 201  Q
    |||||||||||||||||||||    
T  31247985 ttttcttttataatattttca 31247965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 44014955 - 44015072
Alignment:
Q  84 tatatgaggaagtatttcgcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattt 183  Q
    |||| ||||||||| || ||||||| |||||||||||||| || |||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  44014955 tatacgaggaagtactttgcaatgtgtgatgaaactacatgcctatgtactaaatatttcatatttcttttactgaattattgataggattatcgaattt 44015054  T
Q  184 tcttttataatattttca 201  Q
    ||||||||||||||||||    
T  44015055 tcttttataatattttca 44015072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 3458943 - 3458897
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3458943 aattattgataggattaccgaattttcttttataatattttcatatt 3458897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 32063110 - 32063154
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32063110 cgaattattgataggattaccgaattttcttttataatattttca 32063154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 37197487 - 37197445
Alignment:
Q  158 gaattattgataggattaccgaattttcttttataatattttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37197487 gaattattgataggattaccgaattttcttttataatattttc 37197445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 3990693 - 3990737
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  3990693 cgaattattgatatgattaccgaattttcttttataatattttca 3990737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 42045956 - 42046004
Alignment:
Q  158 gaattattgataggattaccgaat-tttcttttataatattttcatatt 205  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  42045956 gaattattgataggattaccgaatattttttttataatattttcatatt 42046004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 53047248 - 53047063
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||| |||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  53047248 cagagaaggactaaatatattgatcagtgatgaagatggtgaaaataacaatgtaacgtttaatgtcgtatatgaggaagtatttcacaatgtgtgatga 53047149  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    | |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53047148 agctacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatattttca 53047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 17757755 - 17757939
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||| |||||| || | |||  ||||||| |||||||||||||||||||| |||||||    
T  17757755 agagaaggactgaagatgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatcgtatacgaggaagtatttcgcaatgtgtgatgaa 17757854  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||| || ||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  17757855 actacatgccaatgtactaaaattttcatatttcttttaccaaattattgataggattaccgaattttcttttataatattttca 17757939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 19059075 - 19059259
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||| |||||| || | |||  ||||||| |||||||||||||||||||| |||||||    
T  19059075 agagaaggactgaagatgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatcgtatacgaggaagtatttcgcaatgtgtgatgaa 19059174  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||| || ||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  19059175 actacatgccaatgtactaaaattttcatatttcttttaccaaattattgataggattaccgaattttcttttataatattttca 19059259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 2702218 - 2702401
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| ||||||||||||||||  || ||||||||||| |||||| ||||||||| | |||||| ||||| |||||||||||||||||||| |||||||    
T  2702218 agagaaggactaaagatattgattgctaatgaagatggtcaagataccaatgtaacgtctaatgtggtataggaggaagtatttcgcaatgtgtgatgaa 2702317  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    | ||||| || ||||||||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  2702318 attacatgccaatgtactaagaatttcata-ttcttttaccgaattattgatagaattatcgaattttcttttataatattttca 2702401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 25916888 - 25916844
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25916888 cgaattattgataggattaccgaattttcttttataatattttca 25916844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 43017564 - 43017612
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43017564 cgaattattgatatgattaccgaattttcttttataatattttcatatt 43017612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 11454681 - 11454722
Alignment:
Q  164 ttgataggattaccgaattttcttttataatattttcatatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11454681 ttgataggattaccgaattttcttttataatattttcatatt 11454722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 21799949 - 21800034
Alignment:
Q  29 aagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatg 114  Q
    |||||||||||||| |||||||||||||| || |  ||| |||||| |||||| || ||||||||||||||||| ||||| |||||    
T  21799949 aagatattgatcaccgatgaagatggtgatgacacaaatctaacatctaatgtggtgtatgaggaagtatttcgaaatgtctgatg 21800034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 837011 - 836967
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  837011 cgaattattgataggattacccaattttcttttataatattttca 836967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 35560548 - 35560592
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  35560548 cgaattattgatatgattaccgaattttcttttataatattttca 35560592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 47501358 - 47501308
Alignment:
Q  151 ttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  47501358 ttttaccgaattattgataggattacaaaattttcttttataatattttca 47501308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 23777141 - 23777185
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  23777141 cgaattattgataggattatcgaattttcctttataatattttca 23777185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 36642934 - 36642890
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  36642934 cgaattattgatagcattaccgaattttcttttgtaatattttca 36642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 46452478 - 46452518
Alignment:
Q  161 ttattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  46452478 ttattgataggattactgaattttcttttataatattttca 46452518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 11454057 - 11454097
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttcatatt 205  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  11454057 tgataagattactgaattttcttttataatattttcatatt 11454097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 24365853 - 24365889
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||||||||||||||| |||||    
T  24365853 tgataggattaccgaattttcttttataatactttca 24365889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 37760776 - 37760819
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  37760776 cgaattatt-ataggattaccaaattttcttttataatattttca 37760819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 45514411 - 45514375
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  45514411 tgatacgattatcgaattttcttttataatattttca 45514375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 38685500 - 38685684
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||    
T  38685500 cagagaaggactaaaaatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaaatattttgcaatgtgtgatga 38685599  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38685600 aactacatgccaatgtactaaaaatttcatattt-ttttaccgaattattgataggattaccgaattttcttttataatattttca 38685684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 5429403 - 5429590
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcg----caatgtatg 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    || ||| ||    
T  5429403 cagagaaggactaaagatattgatcactgatgaagatggtgaagatacaaatgtaacatttaatatcgtatatgaggaagtatttcgttcgcagtgtgtg 5429502  T
Q  112 atgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  5429503 atgaaactacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaatttccttttataatatttt 5429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 23480991 - 23480810
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || | ||  ||||||||||||||||||||||||||||| ||||||    
T  23480991 cagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgacgtctagcgtcgtatatgaggaagtatttcgcaatgtgtgatga 23480892  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||| | || ||||||||||| |||||||||||||||| |||||||||    || ||||||||||||||||||||| |||||||    
T  23480891 aactacgtgccaatgtactaaaattttcatatttcttttaccgaattatt----gggttaccgaattttcttttataacattttca 23480810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 21882557 - 21882721
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| |||||||||| |||||||| ||||||||||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||| |||||||||    
T  21882557 agaaggactaaagatcttgatcacggatgaagatggtgaagacaccaatgtgacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaac 21882656  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattt 183  Q
    ||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  21882657 tacatgccaatgtactaaaattttcatatttattttaccgaattattgataggattaccgaattt 21882721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 318903 - 318947
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  318903 cgaattattgataggattaccgaattttcttttataatattttca 318947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1155869 - 1155825
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1155869 cgaattattgataggattaccgaattttcttttataatattttca 1155825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 44099418 - 44099374
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44099418 cgaattattgataggattaccgaattttcttttataatattttca 44099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 48411777 - 48411733
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  48411777 cgaattattgataggatttccgaattttcttttataatattttca 48411733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 42491790 - 42491748
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatatttt 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  42491790 cgaattattgatatgattaccgaattttcttttataatatttt 42491748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 24595507 - 24595551
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  24595507 cgaattattgataggattatcgaattttcttttatagtattttca 24595551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 27296616 - 27296660
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
T  27296616 cgaattattgataggatttccgaattttctttgataatattttca 27296660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 28949701 - 28949657
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  28949701 cgaattattgataggattgccgaaatttcttttataatattttca 28949657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 51114209 - 51114245
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| ||||||||||||||||||||||||||||    
T  51114209 tgataggactaccgaattttcttttataatattttca 51114245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 9825677 - 9825762
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttc 101  Q
    |||||||||||| ||||||||||| | | ||||||||||| |||||||  |||  || | ||| ||||| ||||| ||||||||||    
T  9825677 cagagaatgactgaagatattgattaataatgaagatggtaaagatatggatgagacgtctaacgtcgtgtatgaagaagtatttc 9825762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 9141325 - 9141141
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  9141325 agagaaggactaaagatattgatcattgatgatgatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaagtatttcgcaatgtgtgatgaa 9141226  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    | | ||| || ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9141225 aatgcatgccaatgtactaaaattttcatatttcttttaccgaattattgataggattactgaattttcttttataatattttca 9141141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 16375773 - 16375588
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||||||||| | ||||||||||||||| ||||||    
T  16375773 cagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgacgtctaacgtcgtatatgatgtagtatttcgcaatgtgtgatga 16375674  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| || ||||||||||| |||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  16375673 aactacatgccaatgtactaaaattttcattttttttttaccgaattattgataagattaccgaattttcttttataatattttca 16375588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 22968071 - 22967907
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||| |||||||||| |||||||| ||||||||||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||| |||||||||    
T  22968071 agaaggactaaagatcttgatcacggatgaagatggtgaagacaccaatgtgacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaac 22967972  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattt 183  Q
    ||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  22967971 tacatgccaatgtactaaaattttcatatttattttaccgaattattgataggattaccgaattt 22967907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 11642459 - 11642313
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatga 115  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| ||||||    
T  11642459 cagagaaggactaaatatattgatcactgatgaaaatggtgaagataccaatgtaacgtctaatgtcgcatatgaggaagtatttcgcaatgtgtgatga 11642360  T
Q  116 aactacataccgatgtactaaaaatttcatatttcttttatcgaatt 162  Q
    ||||||||  | ||||||||||||||| |||||||||||| ||||||    
T  11642359 aactacatgtcaatgtactaaaaattttatatttcttttaccgaatt 11642313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 6250271 - 6250388
Alignment:
Q  84 tatatgaggaagtatttcgcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattt 183  Q
    ||||||||||||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  6250271 tatatgaggaagtatttcgcaatgtgtgatgaaactacatgacaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccaaattt 6250370  T
Q  184 tcttttataatattttca 201  Q
    ||||||||||||||||||    
T  6250371 tcttttataatattttca 6250388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 45286514 - 45286648
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtat----ttcgcaatgtatg 111  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||     ||| |||||| ||    
T  45286514 cagagaaggactaaagatattgatcactgatgaagatgatgaagataccaatgtaacgtctaatgtcgtatatgaggaagtaagtaattcacaatgtgtg 45286613  T
Q  112 atgaaactacataccgatgtactaaaaatttcata 146  Q
    |||||||||||| || |||||||||||||||||||    
T  45286614 atgaaactacatgccaatgtactaaaaatttcata 45286648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 35125357 - 35125448
Alignment:
Q  110 tgatgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35125357 tgatgaaactacatgcccgtgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatattttca 35125448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 48639257 - 48639170
Alignment:
Q  112 atgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
    |||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48639257 atgaaaatacatgccaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccgaattttcttttataatatttt 48639170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 45418502 - 45418449
Alignment:
Q  148 ttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45418502 ttcttttaacgaattattgataggattaccgaattttcttttataatattttca 45418449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 45418592 - 45418502
Alignment:
Q  27 taaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaact 119  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||||| || |||||||||||  |||||||||||| |||||| ||||||||||    
T  45418592 taaatatattgatcacttatgaagatggtgaatataccaatgtaacgttcaatgtcgtata--aggaagtatttcacaatgtgtgatgaaact 45418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 16673790 - 16673841
Alignment:
Q  148 ttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16673790 ttcttttaccgaattattgataggattaccgaattttcttttataatatttt 16673841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 17648158 - 17648209
Alignment:
Q  148 ttcttttatcgaattattgataggattaccgaattttcttttataatatttt 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17648158 ttcttttaccgaattattgataggattaccgaattttcttttataatatttt 17648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2853023 - 2852979
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2853023 cgaattattgataggattaccgaattttcttttataatattttca 2852979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 4681433 - 4681385
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttcatatt 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4681433 cgaattattgataggattaccgatttttcttttataatattttcatatt 4681385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 12140664 - 12140620
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12140664 cgaattattgataggattaccgaattttcttttataatattttca 12140620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 9396257 - 9396301
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  9396257 cgaattattgatatgattaccgaattttcttttataatattttca 9396301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 48639534 - 48639478
Alignment:
Q  16 cagagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaac 72  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||  ||||||||    
T  48639534 cagagaatgactaaagatattgaacattgatgaagatggtgaagatacaaatgtaac 48639478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 18415473 - 18415388
Alignment:
Q  29 aagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatg 114  Q
    |||||||||||||| |||||||||||||| || |  ||| | |||| |||||| || ||||||||||||||||| ||||| |||||    
T  18415473 aagatattgatcaccgatgaagatggtgatgacacaaatctgacatctaatgtggtgtatgaggaagtatttcgaaatgtctgatg 18415388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 16362367 - 16362325
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  16362367 aattattgatatgattaccaaattttcttttataatattttca 16362325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2354236 - 2354192
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||    
T  2354236 cgaattattgatatgcttaccaaattttcttttataatattttca 2354192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 4680708 - 4680664
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||  |||||||| |||||||||||||||||||||||||    
T  4680708 cgaattatttttaggattatcgaattttcttttataatattttca 4680664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 22773713 - 22773670
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  22773713 cgaattattgatatgattacc-aattttcttttataatattttca 22773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 5553752 - 5553724
Alignment:
Q  173 ttaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||    
T  5553752 ttaccgaattttcttttataatattttca 5553724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 30991579 - 30991615
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||| | |||||||||||||||||||||||    
T  30991579 tgataggattatcaaattttcttttataatattttca 30991615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 1394113 - 1394297
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaa 116  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||||||||| |||||| | |||||    
T  1394113 agagaaggactaaatatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtcatatatgaagaagtatttcacaatgtgttatgaa 1394212  T
Q  117 actacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||| || || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1394213 actacatgccaatatactaaaaatttcatatctcttttaccgaattattgataggattaccgaattttcttttataatattttca 1394297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 17905810 - 17905628
Alignment:
Q  19 agaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaac 118  Q
    |||||||||| |||||||||||||||||||||||||||| ||||  |||||||| | ||||||||||||| ||||||||||| ||||||| |||||||||    
T  17905810 agaatgactacagatattgatcactgatgaagatggtgaggatacgaatgtaacgtctaatgtcgtatataaggaagtattttgcaatgtgtgatgaaac 17905711  T
Q  119 tacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  17905710 tacatgccaatggactaaaaatttcatagttcttttaccgaattattgataggatttccgtattttcttttataatattttca 17905628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 29202633 - 29202732
Alignment:
Q  102 gcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||| |||||||||||||| || |||||||||||| |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||    
T  29202633 gcaatgtgtgatgaaactacatgccaatgtactaaaaaattcatacttcttttaccaaattattgataggattaccgaattttatttaataatattttca 29202732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 4810876 - 4810832
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4810876 cgaattattgataggattaccgaattttcttttataatattttca 4810832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 25068486 - 25068530
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  25068486 cgaattattgacaggattaccgaattttcttttataatattttca 25068530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 9829216 - 9829260
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  9829216 cgaattattgataggattaccgaatttttttatataatattttca 9829260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 15298175 - 15298227
Alignment:
Q  17 agagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgt 69  Q
    |||||| |||| || |||||||| ||| ||||||||||||||||||| |||||    
T  15298175 agagaaggactgaatatattgattacttatgaagatggtgaagatattaatgt 15298227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 815 - 632
Alignment:
Q  18 gagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||| ||| ||||||| ||||||||    
T  815 gagaatgactaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaacgtcgtatataaggaagtgttttgcaatgtgtgatgaaa 716  T
Q  118 ctacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
      ||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  715 tcacatgtcaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccaaattttcttttataatattttca 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 9402 - 9585
Alignment:
Q  18 gagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||| ||| ||||||| ||||||||    
T  9402 gagaatgactaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaacgtcgtatataaggaagtgttttgcaatgtgtgatgaaa 9501  T
Q  118 ctacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
      ||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  9502 tcacatgtcaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccaaattttcttttataatattttca 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 29578 - 29395
Alignment:
Q  18 gagaatgactaaagatattgatcactgatgaagatggtgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||| ||| ||||||| ||||||||    
T  29578 gagaatgactaaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaacgtcgtatataaggaagtgttttgcaatgtgtgatgaaa 29479  T
Q  118 ctacataccgatgtactaaaaatttcatatttcttttatcgaattattgataggattaccgaattttcttttataatattttca 201  Q
      ||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  29478 tcacatgtcaatgtactaaaaatttcatatttcttttaccgaattattgataggattaccaaattttcttttataatattttca 29395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 20640103 - 20639957
Alignment:
Q  55 tgaagatatcaatgtaacatttaatgtcgtatatgaggaagtatttcgcaatgtatgatgaaactacataccgatgtactaaaaatttcatatttctttt 154  Q
    |||||||| ||||||||| | ||||||| ||||||||||||||||| ||||| | |||||||||||||| || |||||||||||||||||||||||||||    
T  20640103 tgaagataccaatgtaacgtctaatgtcttatatgaggaagtattttgcaatttgtgatgaaactacatgccaatgtactaaaaatttcatatttctttt 20640004  T
Q  155 atcgaattattgataggattaccgaattttcttttataatattttca 201  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  20640003 accgaattattgataggattaccgaattttcttttataatattttca 20639957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 627877 - 627921
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  627877 cgaattattgataggattaccgaattttcttttataatattttca 627921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 6348367 - 6348411
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  6348367 cgaattattgataggattaccgaattttgttttataatattttca 6348411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 12896236 - 12896192
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  12896236 cgaattattgataggattaccgaattttcttttatcatattttca 12896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 29550624 - 29550668
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  29550624 cgaattattgatatgattaccgaattttcttttataatattttca 29550668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 44543555 - 44543512
Alignment:
Q  158 gaattattgataggattaccgaattttcttttataatattttca 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  44543555 gaattattgatatgattaccgaattttcttttataatattttca 44543512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 44256945 - 44256987
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  44256945 aattattgatatgattaccgaattttcttttataatattttca 44256987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 12898529 - 12898573
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||    
T  12898529 cgaattattgatttgattaccaaattttcttttataatattttca 12898573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 19640421 - 19640457
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19640421 tgatacgattaccgaattttcttttataatattttca 19640457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 19839014 - 19839050
Alignment:
Q  165 tgataggattaccgaattttcttttataatattttca 201  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19839014 tgatacgattaccgaattttcttttataatattttca 19839050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 13552 - 13595
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatattttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13552 cgaattattgataggattaccgaattttcttttataatattttc 13595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 163579 - 163537
Alignment:
Q  159 aattattgataggattaccgaattttcttttataatattttca 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  163579 aattattgatatgattaccgaattttcttttataatattttca 163537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 14387 - 14345
Alignment:
Q  157 cgaattattgataggattaccgaattttcttttataatatttt 199  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  14387 cgaattattgataagattatcgaattttcttttataatatttt 14345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 1521 - 1487
Alignment:
Q  165 tgataggattaccgaattttcttttataatatttt 199  Q
    |||||||||||||||||||||||||||| ||||||    
T  1521 tgataggattaccgaattttcttttatattatttt 1487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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