View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_68 (Length: 205)
Name: NF17836_low_68
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 40180863 - 40181028
Alignment:
| Q |
19 |
agaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgaggtggtgtttcaacaaatttagtttgacaag |
118 |
Q |
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| T |
40180863 |
agaacaggggtagtgatgagattcttattattcttccaaaccaattctacaaagtggataagattataaggtggtgtttcaacaaatttagtttgacaag |
40180962 |
T |
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| Q |
119 |
aggttttaataattttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaatt |
184 |
Q |
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| T |
40180963 |
aggttttaataactttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaatt |
40181028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 38605414 - 38605462
Alignment:
| Q |
107 |
tagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
155 |
Q |
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| T |
38605414 |
tagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
38605462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 46358966 - 46358821
Alignment:
| Q |
19 |
agaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgtttcaacaaatttag |
109 |
Q |
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| T |
46358966 |
agaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttag |
46358867 |
T |
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| Q |
110 |
tttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
155 |
Q |
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| T |
46358866 |
tttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 44459395 - 44459253
Alignment:
| Q |
19 |
agaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgtttcaacaaatttag |
109 |
Q |
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| T |
44459395 |
agaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttag |
44459296 |
T |
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| Q |
110 |
tttgacaagaggttttaataattttgagtaaaaaatgttgttg |
152 |
Q |
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| T |
44459295 |
tttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44459253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 44466928 - 44466786
Alignment:
| Q |
19 |
agaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgtttcaacaaatttag |
109 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| ||| | |||||||||||||| |
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| T |
44466928 |
agaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttag |
44466829 |
T |
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| Q |
110 |
tttgacaagaggttttaataattttgagtaaaaaatgttgttg |
152 |
Q |
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| T |
44466828 |
tttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44466786 |
T |
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