View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17836_low_7 (Length: 540)
Name: NF17836_low_7
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 348 - 516
Target Start/End: Original strand, 8071567 - 8071735
Alignment:
| Q |
348 |
ttaaactaaatatcaataaaccctaataatgatacgtgtcaagagccaagggaatgtggatttagaaataaattccttggattgatttgaagcagctagc |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8071567 |
ttaaactaaatatcaataaaccctaataatgatacgtgtcaagagccaagggaatgtggatttagaaataaattccttggattgatttgaagcagctagc |
8071666 |
T |
|
| Q |
448 |
gacacacaaattaatttttctctctatcgtctctataaatcttcacattcaactctctcacacacacac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8071667 |
gacacacaaattaatttttctctctatcgtctctataaatcttcacattcaactctctctcacacacac |
8071735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 8071255 - 8071426
Alignment:
| Q |
34 |
accaaccaccaaatttcagtctaaaggaaaaatttaaatagtttgaagataagtaagtgggctagacc---accggtctgaatatactaaattctttggt |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
8071255 |
accaaccaccaaatttccgtctaaaggaaaaatttaaatagtttgaagataagtaagtgggctagaccagtaccggtccaaatatactaaattctttgct |
8071354 |
T |
|
| Q |
131 |
aatgaatcaaaaccaattattatccgatcaacgacctccctaactgtaacatactttttttagtaacaattgt |
203 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
8071355 |
aatgaaccaaaaccaactattatccgatcaacgacctccctaacagtaacatac-ttttttagtaacaattgt |
8071426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 8071461 - 8071534
Alignment:
| Q |
239 |
aaatattggtgcgtactctattttctcaatataatgtagaagtaatatatttaaactaaatctttttgcttctt |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8071461 |
aaatattggtgcgtattctattttctcaatataatgtagaagtaatatatttaaactaaatctttttgtttctt |
8071534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University