View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_8 (Length: 523)
Name: NF17836_low_8
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 51847601 - 51848014
Alignment:
| Q |
10 |
caaagggagatccggttgggtcattttgcgggtcaaaacaacccgtttcagacaacacggatgaagaagatgaaaaaatttgctaagaaaaaatttacaa |
109 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51847601 |
caaagggagatccggttgggtcatttcgcaggtcaaaacaacctgtttcagacaacacgggcgaagaagatgaaaaaatttgctaagaaaaaatttacaa |
51847700 |
T |
|
| Q |
110 |
tatctagcatggcaagagttgaaatcacgacctcctcccaatgccacacgtttcgcaccaaccacaacaggaaaacaattacgttaatttaggatgtttg |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51847701 |
tatctagcatggcaagagttgaactcacgacctccttccaatgccacacgttcagcaccaaccacaacaggaaaacaattacgttaatttaggatgtttg |
51847800 |
T |
|
| Q |
210 |
ttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttatatgcatttcatgatattannnnnnnnaagtattggatagtggta |
309 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51847801 |
ttttatttaatttttataacttgttgtgaattgtgaacaattaatacatgttttatatgcatttcatgatattattttttttaagtattggatagtgg-- |
51847898 |
T |
|
| Q |
310 |
ataacattaacaggtccaattaatcattttccttgacatattaaaaacnnnnnnnnaagg-aacaaaacagacctagtcgtgcaattatgtaatttaaaa |
408 |
Q |
| |
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|| ||||||||||||||||| |||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |
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| T |
51847899 |
----caataacaggtccaattaataattttccttggcatattaaaaacttttttttaaggaaaaaaaacagacctagtcgtgcaattatgtaatttaaaa |
51847994 |
T |
|
| Q |
409 |
ttaattttttactgttttat |
428 |
Q |
| |
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|||||||||||||||||||| |
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| T |
51847995 |
ttaattttttactgttttat |
51848014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 425 - 505
Target Start/End: Original strand, 51848035 - 51848115
Alignment:
| Q |
425 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51848035 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
51848115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 26888669 - 26888261
Alignment:
| Q |
10 |
caaagggagatccggttgggtcattttgcgggtcaaaacaacccgtttcagacaacacggatgaagaagatgaaaaaatttgctaagaaaaaatttacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
26888669 |
caaagggagatccggttgggtcatttcgcggatcaaaacaacccgtttcagacaacacgggcgaagaagatgaaaaaatttgctaagaaattttttacaa |
26888570 |
T |
|
| Q |
110 |
tatctagcatggcaagagttgaaatcacgacctcctcccaatgccacacgtttcgcaccaaccacaacaggaaaacaattacgttaatttaggatgtttg |
209 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
26888569 |
tatctagcatggcaagagttgaactcacaacctcc---caatgccacacgttcagcaccaaccacaacaggaaaacaattacgttaatttaagatgtatg |
26888473 |
T |
|
| Q |
210 |
ttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttatatgcatttcatgatattannnnnnnnaagtattggatagtggta |
309 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
26888472 |
ttttatttaatttttataatttgttgtgaattgtgaacaattaatacatattttatatgcatttcatgatattattttttttaagtattggatagtgg-- |
26888375 |
T |
|
| Q |
310 |
ataacattaacaggtccaattaatcattttccttgacatattaaaaacnnnnnnnnaaggaacaaaacagacctagtcgtgcaattatgtaatttaaaat |
409 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26888374 |
----caataacaggtccaattaatcattttccttggcatattaaaaac-tttttttaaggaaaaaaacagacctagtcgtgcaattatgtaatttaaaat |
26888280 |
T |
|
| Q |
410 |
taattttttactgttttat |
428 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
26888279 |
taattttttactgttttat |
26888261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 505
Target Start/End: Complemental strand, 26888240 - 26888160
Alignment:
| Q |
425 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
505 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26888240 |
ttatcaaaatctttaaaataagaacatttgtttgtcgattaaaatagacctaagcaactaaaggtatcaaataaaattatt |
26888160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 166 - 428
Target Start/End: Complemental strand, 13578867 - 13578609
Alignment:
| Q |
166 |
accaaccacaacaggaaaacaattacgttaatttaggatgtttgttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttat |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13578867 |
accaaccacaacatgaaaacaattacgttaatttaggatgtttgttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttat |
13578768 |
T |
|
| Q |
266 |
atgcatttcatgatatta-nnnnnnnnaagtattggatagtggtaataacattaacaggtccaattaatcattttccttgacatattaaaaacnnnnnnn |
364 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
13578767 |
atgcatctcatgatattattattttttaagtattggatagtgg------caataacaggtccaattaatcattttccttggcatattaaaaacttttttt |
13578674 |
T |
|
| Q |
365 |
naagg-aacaaaacagacctagtcgtgcaattatgtaatttaaaattaattttttactgttttat |
428 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
13578673 |
taaggaaaaaaaacagacctagtcgtgcaattatgtaatttaaaactaattttttactgttttat |
13578609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 505
Target Start/End: Complemental strand, 13578588 - 13578508
Alignment:
| Q |
425 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
505 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13578588 |
ttatcaaaaattttaaaataaggacatttgtttgtcgattaaaatagacctaagcatctaacagtatcaaataaaattatt |
13578508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 8943158 - 8943391
Alignment:
| Q |
166 |
accaaccacaacaggaaaacaattacgttaatttaggatgtttgttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttat |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8943158 |
accaaccacaacatgaaaacaattacgttaatttaggatgtttgttttatttaatttttataacttgttgttaattgtgaacaattaatacatgttttat |
8943257 |
T |
|
| Q |
266 |
atgcatttcatgatatta-nnnnnnnnaagtattggatagtggtaataacattaacaggtccaattaatcattttccttgacatattaaaaacnnnnnnn |
364 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8943258 |
atgcatttcatgatattatttttttttaagtattggatagtgg------caataacaggtccaattaatcattttccttggcatattaaaaacttttttt |
8943351 |
T |
|
| Q |
365 |
naaggaacaaaacagacctagtcgtgcaattatgtaattt |
404 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8943352 |
taaggaaaaaaacagacctagtcgtgcaattatgtaattt |
8943391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 425 - 505
Target Start/End: Original strand, 8943553 - 8943633
Alignment:
| Q |
425 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8943553 |
ttatcaaaatctttaaaataaggacatttgtttgtcgattaaaatagacctaagcaactaacagtatcaaataaaattatt |
8943633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 428
Target Start/End: Original strand, 8943503 - 8943532
Alignment:
| Q |
399 |
taatttaaaattaattttttactgttttat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
8943503 |
taatttaaaattaattttttactgttttat |
8943532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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