View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_9 (Length: 509)
Name: NF17836_low_9
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 35341201 - 35340722
Alignment:
| Q |
11 |
atgaaacaacaaactggaggtggtgatgaagctttgtaagcgggaggaaattaaatggtttaggagtgagcttaatataaattgtgaatttgtttgttca |
110 |
Q |
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| T |
35341201 |
atgaaacaacaaactggaggtggtgatgaagctttgtaagcgggaggaaattaaatggtttaggagcgagcctaatataaattgtgaatttgtttgttca |
35341102 |
T |
|
| Q |
111 |
ctatcattgtggtacatgatcacaaaagtaggtatctataacttacatgtccttaactataaccttatcttacaagaacatctaactaacgcaaacattg |
210 |
Q |
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| T |
35341101 |
ctatcattgtggtacatgatcacaaaagtaggtatctataacttacatgtccttaactataaccttatcttacaagaacatctaac----gcaaacattg |
35341006 |
T |
|
| Q |
211 |
gtttggtgcaagtttaaaactactgcacttgtttgttgaacatgaattgtttgtctggtatgatataatgctgctaatgttgggttcagtggaaagtaat |
310 |
Q |
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| T |
35341005 |
gtttggtgcaagtttaaaactactgcacttatttgttgaacatgaattgtttgtctggtatgatataatgctgctaatattgggttaagtggaaagtaat |
35340906 |
T |
|
| Q |
311 |
gtttattttttctacatggtgaactacaattaaacattttcacgagagattgtctccaaaatgattatcagatgagaggagctacgccaaaaacacaatg |
410 |
Q |
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| T |
35340905 |
gtttattttttctacatggtgaactacaattaaacattttcacgagagattgtctccaaaatgattatcagatgagaggagctacgccaaaaacacaata |
35340806 |
T |
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| Q |
411 |
aagttattatatctaactctaacgaaatggtgtg-tggataattaatatggctgcagcacatacatgtgttgcaccgtgcagct |
493 |
Q |
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| T |
35340805 |
aagttattatatctaactctaacgaaatggtgtgttctataattgatatggctgcagcacatacatgtgttgcaccgtgcagct |
35340722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 13580109 - 13579984
Alignment:
| Q |
370 |
aatgattatcagatgagaggagctacgccaaaaacacaatgaagttat--tatatctaactctaacgaaatggtgtgtggataattaatatggctgcagc |
467 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
13580109 |
aatgattatcaaatgagaggagctacgccaaaaacacaataaagttatattatatctaactctaacgaaatggtgtgtggagaattgatatggctgcagc |
13580010 |
T |
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| Q |
468 |
acatacatgtgttgcaccgtgcagct |
493 |
Q |
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| T |
13580009 |
acatacatgtgttgcaccgtgcagct |
13579984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 15492700 - 15492885
Alignment:
| Q |
11 |
atgaaacaacaaactggaggtggtgatgaagctttgtaagcgggaggaaattaaatggtttaggagtgagcttaatataaattgtgaatttgtttgttc- |
109 |
Q |
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|||||||| ||||| || || ||||||| |||| |||||| |||| ||||||||||||| || ||||||||||| || ||||||||||||||||||| |
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| T |
15492700 |
atgaaacagcaaacaggcggcggtgatgcagctctgtaagttggag-aaattaaatggttaagcagtgagcttaacatgaattgtgaatttgtttgttag |
15492798 |
T |
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| Q |
110 |
actatcattgtggtacatgatcacaaaagtaggtatctataacttacatgtccttaactataaccttatcttacaagaacatctaac |
196 |
Q |
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||||| ||||||||||||||||||||||||| ||| ||| |||| ||||||| | | |||||||||||| |||||||||||||||| |
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| T |
15492799 |
actattattgtggtacatgatcacaaaagtaagtacctaaaactcgcatgtccgtgagtataaccttatcctacaagaacatctaac |
15492885 |
T |
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