View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_10 (Length: 523)
Name: NF17837_high_10
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 22124292 - 22123800
Alignment:
| Q |
11 |
tcgaagaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaaaaagtaaatatcaaaaa |
110 |
Q |
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| T |
22124292 |
tcgaacaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaaaaagtaaatatcaaaa- |
22124194 |
T |
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| Q |
111 |
gaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtcgaaagacatctccatca |
210 |
Q |
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| T |
22124193 |
gaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtcgaaagacatctccatcg |
22124094 |
T |
|
| Q |
211 |
atttctacagggggaacatgctcgacgacagccatcccatgcacaaatctagcattcatatcccaaatgctgagaacttgaagcttctctaagttctgaa |
310 |
Q |
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| T |
22124093 |
atttctacaaggggaacatgctcgacgacagccatcccatgcacaaatctagcatgcatatcccaaatgctgagaacttgatgcttctctaagttctgaa |
22123994 |
T |
|
| Q |
311 |
ttccagtggggaccctctccagttggggaatacttcatagctcgagattttgtagtgaaaccaatgctcctttttcgataacaattgaattcaagtttct |
410 |
Q |
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| T |
22123993 |
ttccagtggagaccctctccagttggggaatacttcatagctcgagattttgtagtgaaaccaatgctcctttttcgataacaattgaattcaagtttct |
22123894 |
T |
|
| Q |
411 |
catttgagcatggaatagtccttttagtttctgaaatcctccatcttggaattggaaacttgtgccttcataagcatagccaatgattgagagg |
504 |
Q |
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| T |
22123893 |
catttgagcatggaatagtccttttagtttctgaaaccctccatcttggaattgcaaacttgtgctttcataagcatagccaatgatcgagagg |
22123800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 2303930 - 2303965
Alignment:
| Q |
372 |
caatgctcctttttcgataacaattgaattcaagtt |
407 |
Q |
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| T |
2303930 |
caatgctcctttatcgataacaattgaattcaagtt |
2303965 |
T |
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