View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_13 (Length: 497)
Name: NF17837_high_13
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 15580357 - 15579888
Alignment:
| Q |
18 |
atggagatacccattgatgagcaaaaggcctttagccatgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15580357 |
atggagatacccattgatgagcaaaaggcctttagccatgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctg |
15580258 |
T |
|
| Q |
118 |
atgtcattgagcaggtgaaaccttcaactacttgtactctcattgcaatttatttgtatagtctgaattttagttgcttggttatttatatttgtgtagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15580257 |
atgtcattgagcaggtgaaaccttcaacgacttgtactctcattgcaatttatttgtatagtctgaattttcattgcttggttatttatatttgtgtagg |
15580158 |
T |
|
| Q |
218 |
ttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaagaaatttacagaggagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15580157 |
ttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaagaaatatacagaggagt |
15580058 |
T |
|
| Q |
318 |
tcacatggatatggatagtgaagctgctagacagactctgaccagcctcacagaatctggtacataaaattatgcctaaagtgtcattgaannnnnnnct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15580057 |
tcacatggatatggatagtgaagctgctagacagactctgaccagcctcacagaatctggtacataaaattatgcctaaagtgtcattgaatttttttct |
15579958 |
T |
|
| Q |
418 |
tgaaatttcaatgtggctacttataaatatacctttagattccattttcttccctctgaaatactctctg |
487 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15579957 |
tgaaatttcaatgtggctacttataaatttacctttagattccattttcttccctctgaaatactctctg |
15579888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 12049970 - 12050438
Alignment:
| Q |
18 |
atggagatacccattgatgagcaaaaggcctttagccatgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctg |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||| |
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| T |
12049970 |
atggagataccaattgaagagcaaaaggcctttagccatgttattagattaatttcagcatcagttgacgaagtctcaatccaaggtggcctttcttctg |
12050069 |
T |
|
| Q |
118 |
atgtcattgagcaggtgaaaccttcaactacttgtactctcattgcaattt-atttgtatagtctgaattttagttgcttggttatttatatttgtgtag |
216 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12050070 |
atgtcattg-gcaggtgaaaccttcaacgacttgtacttgcgttgcaattttatttgtatagtctgaattttagttgcttgattatttatatttgtgtag |
12050168 |
T |
|
| Q |
217 |
gttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaagaaatttacagaggag |
316 |
Q |
| |
|
|| ||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
12050169 |
gtcgaggtagaagttcaacgcttaagtgttttgaaagccagtaagatgaaggaattagtgtttaaaagacacaatgaacttgaacaaatttacaaaggag |
12050268 |
T |
|
| Q |
317 |
ttcacatggatatggatagtgaagctgctagacagactctgaccagcctcacagaatctggtacataaaattatgcctaaagtgtcattgaa-nnnnnnn |
415 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| || |||| |||||||||||||| |||| |||||||| |||| |||||| |
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| T |
12050269 |
atcacatggatatggatagtgaagctg-tagacagattctgatcaatctcatagaatctggtacat-aaataatgcctaaggtgttattgaatttttttt |
12050366 |
T |
|
| Q |
416 |
cttgaaatttcaatgtggctacttataaatatacctttagattccattttcttccctctgaaatactctctg |
487 |
Q |
| |
|
||||| ||||||| ||||||||||||||| || || ||||||||||||| |||||||| |||||| ||||| |
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| T |
12050367 |
cttgatatttcaacatggctacttataaatgtatctgtagattccattttattccctcttaaataccctctg |
12050438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 55 - 290
Target Start/End: Original strand, 8334419 - 8334656
Alignment:
| Q |
55 |
atgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctgatgtcattgagcaggtgaaaccttcaactacttgtac |
154 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||| ||| || |||||||| |||| || || ||||||||||||||||||| ||||| || |
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| T |
8334419 |
atgttattggattaatttcagcatcagttgacgaagtgtcaatccacgggagcctttctaatgatatcgttaagcaggtgaaaccttcaacgacttgaac |
8334518 |
T |
|
| Q |
155 |
tctcattgcaattt--atttgtatagtctgaattttagttgcttggttatttatatttgtgtaggttgaggttgaagttcagcagttaaatgttttgaaa |
252 |
Q |
| |
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| ||||||||||| |||| ||| ||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||| ||| | |||||||| |
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| T |
8334519 |
ttgcattgcaattttaatttctatcatctgaattttagttgcttgatcatttatatttatgtaggttgatgttgaagttcagcgcttacaagttttgaat |
8334618 |
T |
|
| Q |
253 |
gccagtaagatgaaggaattagtgtttaaaagacagaa |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8334619 |
cccagtaagatgaaggaatttgtgtttaaaagacagaa |
8334656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 8334654 - 8334750
Alignment:
| Q |
264 |
gaaggaattagtgtttaaaagacagaatgaacttgaagaaatttacagaggagttcacatggatatggatagtgaagctgctagacagactctgacc |
360 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| | ||||||||||||||| ||||||| |
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| T |
8334654 |
gaaggaattagcgtttaaaagacagaatgaacttgaagaaattcatagaggagcacacatggatatggatgctaaagctgctagacagattctgacc |
8334750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 486
Target Start/End: Original strand, 8334800 - 8334870
Alignment:
| Q |
416 |
cttgaaatttcaatgtggctacttataaatatacctttagattccattttcttccctctgaaatactctct |
486 |
Q |
| |
|
|||||||||| || |||||||| || |||| |||| |||| |||| ||||||||||||| |||||| |||| |
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|
| T |
8334800 |
cttgaaatttaaacgtggctacgtacaaatgtaccattagcttccgttttcttccctcttaaatacactct |
8334870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 11909024 - 11908561
Alignment:
| Q |
18 |
atggagatacccattgatgagcaaaaggcctttagccatgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctg |
117 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | || |
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|
| T |
11909024 |
atggagatacagattgatgagaaaaaggcctttaaccatgttattagattaatttcagcatcagttgatgaagtgtcaatcgaaggtggcctttgttcta |
11908925 |
T |
|
| Q |
118 |
atgtcattgagcaggtgaaaccttcaactacttgtactctcattgcaattt-atttgtatagtctgaattttagttgcttggttatttatatttgtgtag |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
11908924 |
atgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaattttatttgtatagtctgaattttagttgcttgattatttatatttgtgttg |
11908825 |
T |
|
| Q |
217 |
gttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaagaaatttacagaggag |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
11908824 |
gttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagatagaatgtacttgaagaaatttacagaggag |
11908725 |
T |
|
| Q |
317 |
ttcacatggatatggatagtgaagctgctagacagactctgaccagcctcacagaatctggtacataaaattatgcctaaagtgtcattgaannnnnnnc |
416 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| |||||| |||||| |||| | |
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|
| T |
11908724 |
ttcatatggatatggatagtgaagctgttagacagattctgaccagcctcatagaatctggtacat-aaacaatgcctgaagtgttgctgaatttttttc |
11908626 |
T |
|
| Q |
417 |
ttgaaatttcaatgtggctacttataaatatacctttagattccattttcttccctctgaaatac |
481 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||| |
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|
| T |
11908625 |
ttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctcttaaatac |
11908561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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