View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_high_18 (Length: 426)

Name: NF17837_high_18
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_high_18
NF17837_high_18
[»] chr2 (7 HSPs)
chr2 (205-426)||(13844129-13844350)
chr2 (1-173)||(13843926-13844097)
chr2 (1-89)||(5198787-5198875)
chr2 (5-106)||(30397046-30397145)
chr2 (1-67)||(28715881-28715947)
chr2 (1-89)||(15602974-15603062)
chr2 (302-379)||(13840688-13840765)
[»] chr6 (6 HSPs)
chr6 (1-89)||(27874122-27874210)
chr6 (1-89)||(27878841-27878929)
chr6 (1-89)||(26976263-26976351)
chr6 (1-89)||(1234798-1234886)
chr6 (1-70)||(30986624-30986693)
chr6 (1-70)||(30966768-30966837)
[»] chr4 (8 HSPs)
chr4 (1-89)||(42266000-42266088)
chr4 (1-89)||(42270719-42270807)
chr4 (1-89)||(24520157-24520245)
chr4 (1-89)||(30945608-30945696)
chr4 (1-89)||(30950314-30950402)
chr4 (1-89)||(48697264-48697352)
chr4 (1-89)||(48701953-48702041)
chr4 (1-70)||(48782857-48782924)
[»] chr5 (5 HSPs)
chr5 (1-89)||(34352345-34352433)
chr5 (1-89)||(34360053-34360141)
chr5 (1-89)||(29585432-29585520)
chr5 (1-89)||(41718507-41718595)
chr5 (1-89)||(41723233-41723321)
[»] chr3 (4 HSPs)
chr3 (1-89)||(5818645-5818733)
chr3 (1-89)||(5823407-5823495)
chr3 (1-89)||(54545981-54546069)
chr3 (8-70)||(2817401-2817463)
[»] chr8 (2 HSPs)
chr8 (1-89)||(9439504-9439592)
chr8 (1-89)||(9444224-9444312)
[»] chr1 (1 HSPs)
chr1 (1-55)||(30697246-30697300)
[»] chr7 (1 HSPs)
chr7 (1-112)||(16183763-16183873)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 205 - 426
Target Start/End: Original strand, 13844129 - 13844350
Alignment:
Q  205 tctcacttatgtgacatgattgaaatgatacaacgtggttgttctttttaggaccaaaagattattgtcccataagaaaaattaatgtcatttatgcaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13844129 tctcacttatgtgacatgattgaaatgatacaacgtggttgttatttttaggaccaaaagattattgtcccataaaaaaaattaatgtcatttatgcaat 13844228  T
Q  305 ttcaaatttgtgcaacaattaccaatagaaactattgagccaacgtgtttgacttggcacataaattgctttacacgttcaaaggatccagcggaggaac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13844229 ttcaaatttgtgcaacaattaccaatagaaactattgagccaacgtgtttgacttggcacataaattgctttacacgttcaaaggatccagcgaaggaac 13844328  T
Q  405 atcatcaaagggaacatatctc 426  Q
    ||||||||||||||||||||||    
T  13844329 atcatcaaagggaacatatctc 13844350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13843926 - 13844097
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaatgttaatactag 100  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13843926 agaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaatgttaatactag 13844025  T
Q  101 gagaaacttcacttgaataaaccatcatttttctcttggcatcgtttctctcactctcaagaagtacatgcac 173  Q
    ||||||| ||||  | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13844026 gagaaacctcac-cggataaaccatcatttttctctcggcatcgtttctctcactctcaagaagtacatgcac 13844097  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5198787 - 5198875
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  5198787 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 5198875  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 30397046 - 30397145
Alignment:
Q  5 ttttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaatgttaatactaggaga 104  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||| ||||  |||||||| |||||| ||  |||||||||||| |||| |||||||||    
T  30397046 ttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-gaaataggagaatattaacactaggaga 30397143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28715947 - 28715881
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccac 67  Q
    |||| |||||| ||||||||||||||||||||| ||| | ||||| |||| |||||| |||||||||    
T  28715947 agaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccac 28715881  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15603062 - 15602974
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| ||||||||||| |||||||||||| ||||||| | ||||| || | || ||| |||||||| ||||| ||  ||||||||||||    
T  15603062 agaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaat 15602974  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 13840688 - 13840765
Alignment:
Q  302 aatttcaaatttgtgcaacaattaccaatagaaactattgagccaacgtgtttgacttggcacataaattgctttaca 379  Q
    ||||||||| ||||||| ||||||||||  | ||||  ||| ||||| | ||||| |||||||| |||||||||||||    
T  13840688 aatttcaaaattgtgcagcaattaccaaccggaacttctgatccaacttatttgagttggcacacaaattgctttaca 13840765  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27874122 - 27874210
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||| | ||| ||||||||||||    
T  27874122 agaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 27874210  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27878841 - 27878929
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||| | ||| ||||||||||||    
T  27878841 agaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 27878929  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26976263 - 26976351
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  26976263 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 26976351  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1234886 - 1234798
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  1234886 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 1234798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30986693 - 30986624
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactct 70  Q
    |||| ||||||||||||||||||||| |||||||||| | ||||| |||| |||||| ||||||||||||    
T  30986693 agaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactct 30986624  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30966837 - 30966768
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactct 70  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| |||| |||||| ||||||||||||    
T  30966837 agaactttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactct 30966768  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42266088 - 42266000
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||| | ||| ||||||||||||    
T  42266088 agaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 42266000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42270807 - 42270719
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||| | ||| ||||||||||||    
T  42270807 agaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 42270719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 24520157 - 24520245
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  24520157 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 24520245  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30945608 - 30945696
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| ||||||||||||||||||||||||| |||||| | |||||||||| |||||| |||||||||||| | ||| ||||||||||||    
T  30945608 agaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 30945696  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30950314 - 30950402
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| ||||||||||||||||||||||||| |||||| | |||||||||| | |||| |||||||||||| | ||| ||||||||||||    
T  30950314 agaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaat 30950402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48697264 - 48697352
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  48697264 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 48697352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48701953 - 48702041
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  48701953 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 48702041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48782924 - 48782857
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactct 70  Q
    |||| |||||||||||||||||||||| | ||||||| | |||||||| |  ||||| ||||||||||||    
T  48782924 agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactct 48782857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34352433 - 34352345
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  34352433 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 34352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34360141 - 34360053
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  34360141 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 34360053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 29585432 - 29585520
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||  |||||| |||||||||||| | ||| ||||||||||||    
T  29585432 agaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaat 29585520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 41718595 - 41718507
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  41718595 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 41718507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 41723321 - 41723233
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  41723321 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 41723233  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5818645 - 5818733
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  5818645 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 5818733  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5823407 - 5823495
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  5823407 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 5823495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 54546069 - 54545981
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||| ||||||||||||||||| | ||| |||||| |||||| |||||||||||| | ||| ||||||||||||    
T  54546069 agaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 54545981  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 2817401 - 2817463
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactct 70  Q
    |||||||||||||||||||||| || |||| | |||||||||| |||||| ||| ||||||||    
T  2817401 tcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactct 2817463  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9439504 - 9439592
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  9439504 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 9439592  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9444224 - 9444312
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaat 89  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| |||||| || ||||||||| | ||| ||||||||||||    
T  9444224 agaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaat 9444312  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30697246 - 30697300
Alignment:
Q  1 agaattttcactaagtggaagaaattacaggacctctttataaatacaagaagag 55  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  30697246 agaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 16183763 - 16183873
Alignment:
Q  1 agaattttcactaagtggaaga-aattacaggacctctttataaatacaagaagagtaaaattaccactctattttaaaaataggagaatgttaatacta 99  Q
    |||| ||||||||||||||||| ||||||| ||||||| | |||||||||| ||||  |||||||| |||| | ||  ||||||||||||  ||| ||||    
T  16183763 agaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaacacta 16183860  T
Q  100 ggagaaacttcac 112  Q
    |||||||| ||||    
T  16183861 ggagaaacctcac 16183873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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