View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_28 (Length: 367)
Name: NF17837_high_28
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 45054305 - 45054645
Alignment:
| Q |
10 |
catcatcaccatgagaatctaaccatgtttaggataaacatcagcaactaaaacaacattttagttttcatttatgcatgcacatgactcaaacaaaaca |
109 |
Q |
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| T |
45054305 |
catcatcaccatgagaatctaaccatgtttaggataaacatcagcaactaaaacaacattttagttttcatttatgcatgcacatgactcaaacaaaaca |
45054404 |
T |
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| Q |
110 |
ttatgcaagcaatttcttaccaggaactccccttacataaggcaccttatgaagtgcaggcaactgtggtggcattatcccctgttggacaccagctcca |
209 |
Q |
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| T |
45054405 |
ttatgcaagcaatttcttaccaggaactccccttacataaggcaccttatgaagtgaaggcaactgtggtggcattatcccctgttggacaccagctcca |
45054504 |
T |
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| Q |
210 |
agagaaaggaaaatttcataaattttgcggcatgggcaagaaagctttgactgagagaatacagctggatcagttgagcttctcagaaaacagttatgat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45054505 |
agagaaaggaaaatttcataaattttgcggcatgggcaagaaagctttgactgagagaatacagctggatcagttgagcttctcagaaaacagttatgat |
45054604 |
T |
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| Q |
310 |
catcttgttgatcgcttcctggattcatctgattggaagat |
350 |
Q |
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| T |
45054605 |
catcttgttgatcgcttcctggattcaactgattagaagat |
45054645 |
T |
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