View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17837_high_29 (Length: 365)
Name: NF17837_high_29
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 10596864 - 10596518
Alignment:
| Q |
8 |
ttcttatcatttgtcttattttggcacacttgaatagttttcacctctggtgttaactctttactagcctttgatgcactcttaccatttgaatttggtt |
107 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| | ||| | ||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
10596864 |
ttcttatcatttgtcttgttttggcacgcttgagtagttttcatctctggtgcaacctcctcactagcctttggtgcactcttactatctgaatttggtt |
10596765 |
T |
|
| Q |
108 |
caatcctgtctttgatgtctctcaaaggaatgttctttgattcaacagatgttgctttcgagtgttcttttgaagcaggtggacttggagaccttgaact |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10596764 |
cagtcctgtctttgatgtctctcaaaggaatgttctttgatccaaaagatgttgctttcaagtgttcttttgaagcaggtggacttggagaccttgaact |
10596665 |
T |
|
| Q |
208 |
tccatttccatttttcttccttggcaatggatcaactctcagacaaacaggaggtaacttggatcccttaggcggagatgttgattgtcgtttactcatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
10596664 |
cccatttccatttttcttccttggcaatggatcaactctcagacaaacaggaggtaacttggatcccttaggcggagatgttggtcgtcgtttactcatc |
10596565 |
T |
|
| Q |
308 |
gagttagagtcnnnnnnngtcacattctctttggcatcattcatttc |
354 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10596564 |
gagttagagtctttttttgtcacattctctttggcatcattcatttc |
10596518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University