View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_high_3 (Length: 587)

Name: NF17837_high_3
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_high_3
NF17837_high_3
[»] chr5 (30 HSPs)
chr5 (1-572)||(8547454-8548025)
chr5 (436-556)||(9074125-9074245)
chr5 (441-552)||(1599691-1599802)
chr5 (438-556)||(8529538-8529656)
chr5 (446-556)||(8536110-8536220)
chr5 (69-276)||(8529192-8529403)
chr5 (93-203)||(8644488-8644598)
chr5 (1-276)||(1599940-1600216)
chr5 (480-550)||(2844444-2844514)
chr5 (480-550)||(2856277-2856347)
chr5 (480-550)||(2873887-2873957)
chr5 (480-550)||(2904393-2904463)
chr5 (93-203)||(8637143-8637253)
chr5 (169-274)||(2874139-2874248)
chr5 (171-276)||(8535858-8535967)
chr5 (68-273)||(9074369-9074578)
chr5 (68-276)||(8641634-8641846)
chr5 (169-274)||(2856529-2856638)
chr5 (1-47)||(8535691-8535737)
chr5 (218-276)||(2904643-2904705)
chr5 (345-392)||(8536024-8536071)
chr5 (93-143)||(2904783-2904833)
chr5 (93-147)||(8678090-8678144)
chr5 (453-547)||(11353898-11353992)
chr5 (453-547)||(11373401-11373495)
chr5 (1-42)||(8529133-8529174)
chr5 (1-34)||(9074606-9074639)
chr5 (1-37)||(2904878-2904914)
chr5 (219-276)||(8644623-8644684)
chr5 (321-373)||(8644717-8644769)
[»] scaffold0627 (3 HSPs)
scaffold0627 (337-571)||(5187-5418)
scaffold0627 (94-279)||(4948-5135)
scaffold0627 (1-42)||(4837-4878)
[»] chr6 (2 HSPs)
chr6 (337-568)||(16716885-16717113)
chr6 (94-279)||(16716647-16716836)
[»] chr7 (6 HSPs)
chr7 (440-556)||(48361239-48361355)
chr7 (1-276)||(48361492-48361768)
chr7 (436-552)||(35780427-35780544)
chr7 (1-44)||(35780018-35780061)
chr7 (345-392)||(35780336-35780383)
chr7 (345-392)||(48361388-48361435)
[»] chr4 (3 HSPs)
chr4 (69-276)||(9443353-9443564)
chr4 (438-556)||(9443699-9443817)
chr4 (1-42)||(9443294-9443335)
[»] chr1 (1 HSPs)
chr1 (69-140)||(5131022-5131093)


Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 8548025 - 8547454
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgattttcaaacacagatgaaggagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548025 tcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcacaccacgaacttcggtattatgattttcaaacacagatgaaggagaag 8547926  T
Q  101 gaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547925 gaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtggg 8547826  T
Q  201 atacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaacaattaccacacgctcaatctcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547825 atacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaacaattaccacacgctcaatctcac 8547726  T
Q  301 atgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547725 atgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttg 8547626  T
Q  401 atttaaaacataatctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggttt 500  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547625 atttaaaatataagctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggttt 8547526  T
Q  501 ccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547525 ccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 8547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 9074245 - 9074125
Alignment:
Q  436 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccact 535  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| |    
T  9074245 tcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccatt 9074146  T
Q  536 gcaagaattcacaatatcaaa 556  Q
    |||||||||||||||||||||    
T  9074145 gcaagaattcacaatatcaaa 9074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 552
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  441 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 540  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  541 aattcacaatat 552  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 556
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  438 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 537  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  538 aagaattcacaatatcaaa 556  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 556
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  446 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 545  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  546 acaatatcaaa 556  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 276
Target Start/End: Original strand, 8529192 - 8529403
Alignment:
Q  69 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcgg 168  Q
    |||||||||| ||||||||  || |||||||||||| || || ||||||||  ||||||| || |||  |||||| |||| |  |    ||| |||||      
T  8529192 attatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt 8529291  T
Q  169 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 264  Q
    |||||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||    
T  8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
Q  265 tgtgtatctcaa 276  Q
    ||| ||||||||    
T  8529392 tgtttatctcaa 8529403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 8644488 - 8644598
Alignment:
Q  93 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 192  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | |    |||| ||||| |||||||||||| |||| ||| |||    
T  8644488 aggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaaca 8644587  T
Q  193 caagtgggata 203  Q
     ||||||||||    
T  8644588 taagtgggata 8644598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1600216 - 1599940
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgattttcaaacacagatgaaggagaag 100  Q
    ||||||||||||||| |||||||||||||||||| ||||| | | ||  |   ||||| |  | |  ||||||||||| ||||| ||  || ||||||||    
T  1600216 tcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgtt---accacaagttccattattatgatttccaaactcatgtggaggagaag 1600120  T
Q  101 gaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtggg 200  Q
    ||||||| || |||||||| ||||||||||| |||  |||||| |||  |  |    ||| | |||  |||||||||||||||| |||||||||||||||    
T  1600119 gaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcaccattcacacaagtggg 1600020  T
Q  201 atacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 276  Q
    || | ||||     || |||||||||||||||||||||    ||||||||| | ||||||||| ||||||| ||||||||    
T  1600019 attcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaa 1599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  480 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 550  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  480 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 550  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  480 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 550  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  480 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 550  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 8637143 - 8637253
Alignment:
Q  93 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 192  Q
    |||||||||||||||||| ||||||||  |||| ||||| |||||||||||||||| | |     ||||||||| |||||||||||  | || |||||||    
T  8637143 aggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcaca 8637242  T
Q  193 caagtgggata 203  Q
    |||||||||||    
T  8637243 caagtgggata 8637253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 2874248 - 2874139
Alignment:
Q  169 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 264  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| |||||||||||| |    
T  2874248 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcg 2874149  T
Q  265 tgtgtatctc 274  Q
    ||||||||||    
T  2874148 tgtgtatctc 2874139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 8535858 - 8535967
Alignment:
Q  171 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 266  Q
    |||||| ||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | ||| ||||| ||||||    
T  8535858 ccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtg 8535957  T
Q  267 tgtatctcaa 276  Q
    | ||||||||    
T  8535958 tttatctcaa 8535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 273
Target Start/End: Complemental strand, 9074578 - 9074369
Alignment:
Q  68 tattatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcg 167  Q
    ||||||| ||| ||||||||   | ||||||||||||||| || |||||||| ||||||||||| ||| ||||||| |||| |  |   |  | | |||     
T  9074578 tattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatct 9074479  T
Q  168 gatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagt 263  Q
     |||||||||||||||| |||||||||||||||||||   |||    || |||||||||||||||||||||    ||||||| || ||| |||||| |||    
T  9074478 tatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagt 9074379  T
Q  264 gtgtgtatct 273  Q
    |||| |||||    
T  9074378 gtgtttatct 9074369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 276
Target Start/End: Original strand, 8641634 - 8641846
Alignment:
Q  68 tattatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcg 167  Q
    ||||||||||| ||||||||  || ||||||||||||| | |  || ||||| ||||| ||||| ||||| ||||| |||| |  |    ||| ||||      
T  8641634 tattatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaattt 8641733  T
Q  168 gatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagt 263  Q
    ||| ||||||||  ||| ||||||||||||||||||| |||||   |||  |||||| |||||||||||||    ||||||||||| ||||| ||| |||    
T  8641734 gattcaatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagt 8641833  T
Q  264 gtgtgtatctcaa 276  Q
    |||| ||||||||    
T  8641834 gtgtttatctcaa 8641846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 2856638 - 2856529
Alignment:
Q  169 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 264  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| || ||||||||| |    
T  2856638 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcg 2856539  T
Q  265 tgtgtatctc 274  Q
    ||||||||||    
T  2856538 tgtgtatctc 2856529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8535691 - 8535737
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaatacgtct 47  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  8535691 tcacaaatgtaaagaaatccctttaattctcccatgctaatatgtct 8535737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 2904705 - 2904643
Alignment:
Q  218 aagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 276  Q
    |||||||||||||||||||||    ||||||||||| || ||||||||| |||||||||||||    
T  2904705 aagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaa 2904643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 8536024 - 8536071
Alignment:
Q  345 tttatcactttatattcattagttttaggatagaaaccacaaccagct 392  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  8536024 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 2904833 - 2904783
Alignment:
Q  93 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatat 143  Q
    |||||||||||||||||| | |||||| ||||||||||  |||||||||||    
T  2904833 aggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatat 2904783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 8678090 - 8678144
Alignment:
Q  93 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagac 147  Q
    |||||||||||||||||| ||| ||||  |||| ||||| |||||||||||||||    
T  8678090 aggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagac 8678144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 547
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  453 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 547  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 547
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  453 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 547  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8529133 - 8529174
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaata 42  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  8529133 tcacaaatgtatagaaatccctttaattctcccatgctaata 8529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9074639 - 9074606
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctccca 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  9074639 tcacaaatgtaaagaaatccctttaattctccca 9074606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2904914 - 2904878
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagc 37  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  2904914 tcacaaatgtaaagaaatcccttcaattctcccaagc 2904878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 8644623 - 8644684
Alignment:
Q  219 agaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 276  Q
    ||||||||||||||| ||||    ||||||||||| ||||||||| ||||||| ||||||||    
T  8644623 agaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa 8644684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 8644717 - 8644769
Alignment:
Q  321 cgtctagcatatttcttccaaatatttatcactttatattcattagttttagg 373  Q
    |||||| ||||||| | ||||||||  ||||| ||||||||||||||||||||    
T  8644717 cgtctaacatatttgtcccaaatatacatcaccttatattcattagttttagg 8644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 101; Significance: 9e-50; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 337 - 571
Target Start/End: Original strand, 5187 - 5418
Alignment:
Q  337 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 436  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||   |||||   ||  |||  | | ||||||| |||||||||||     
T  5187 tccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagct---tcttgtcctattacacgaaccgtgtcatgtggcatacgaac 5283  T
Q  437 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 536  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  537 caagaattcacaatatcaaaatgatcacgatctct 571  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 94 - 279
Target Start/End: Original strand, 4948 - 5135
Alignment:
Q  94 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 193  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||  |||  | || || ||| ||||| ||||||||||||||||| ||||||||    
T  4948 ggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccattcacac 5045  T
Q  194 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 279  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||| ||||    
T  5046 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatctcgacaa 5135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4837 - 4878
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaata 42  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  4837 tcacaaatgtaaagaaatccctttaattctcccatgctaata 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 337 - 568
Target Start/End: Original strand, 16716885 - 16717113
Alignment:
Q  337 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 436  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||   |||||   ||  |||| | |  ||||||| ||||||||||     
T  16716885 tccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagct---tcttgtcctattacatgaaccctgtcattcggcatacgaac 16716981  T
Q  437 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 536  Q
     ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  537 caagaattcacaatatcaaaatgatcacgatc 568  Q
    || ||||||||||||| ||| | |||||||||    
T  16717082 catgaattcacaatattaaacttatcacgatc 16717113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 94 - 279
Target Start/End: Original strand, 16716647 - 16716836
Alignment:
Q  94 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 193  Q
    |||||||||||||| || ||| |||| |||||||||||||||||||||||||||  | ||||| ||| ||||  || |||||||||||||| ||||||||    
T  16716647 ggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccattcacac 16716746  T
Q  194 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 279  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  16716747 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaa 16716836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 440 - 556
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  440 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 539  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  540 gaattcacaatatcaaa 556  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 48361768 - 48361492
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgattttcaaacacagatgaaggagaag 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| | ||  |   |||| ||| | |  ||||||||||| ||||||||  || ||||||||    
T  48361768 tcacaaatgtaaagaaatccctttaattctcccatgctaatatgcctgtt---accaagaattccattattatgatttccaaacacatgtggaggagaag 48361672  T
Q  101 gaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtggg 200  Q
    ||||||| || | |||||| ||||||||||| ||| ||||||| |||| |  |    ||| |||||  |||||||||||||||| |||||||||||||||    
T  48361671 gaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtggg 48361572  T
Q  201 atacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 276  Q
    ||||   |||   ||| ||||||| |||||||||||||    ||| ||||| | ||||||||| ||||||| ||||||||    
T  48361571 atactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaa 48361492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 552
Target Start/End: Original strand, 35780427 - 35780544
Alignment:
Q  436 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccac 534  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| |||     
T  35780427 tcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccat 35780526  T
Q  535 tgcaagaattcacaatat 552  Q
    |||||||||| |||||||    
T  35780527 tgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35780018 - 35780061
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaatacg 44  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  35780018 tcacaaatgtaaagaaatccctttaattctcccatgctaatacg 35780061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 35780336 - 35780383
Alignment:
Q  345 tttatcactttatattcattagttttaggatagaaaccacaaccagct 392  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  35780336 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 48361435 - 48361388
Alignment:
Q  345 tttatcactttatattcattagttttaggatagaaaccacaaccagct 392  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48361435 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 48361388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 276
Target Start/End: Original strand, 9443353 - 9443564
Alignment:
Q  69 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcgg 168  Q
    |||||||||| ||||||||  || ||||||||||||||| || |||||||| |||||||| || |||  |||||| |||| |  |   |||| |||||      
T  9443353 attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatctt 9443452  T
Q  169 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 264  Q
    |||||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||    
T  9443453 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 9443552  T
Q  265 tgtgtatctcaa 276  Q
    ||| ||||||||    
T  9443553 tgtttatctcaa 9443564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 556
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  438 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 537  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  538 aagaattcacaatatcaaa 556  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9443294 - 9443335
Alignment:
Q  1 tcacaaatgtaaagacatccctttaattctcccaagctaata 42  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  9443294 tcacaaatgtatagaaatccctttaattctcccatgctaata 9443335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 5131022 - 5131093
Alignment:
Q  69 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaa 140  Q
    ||||||||||||||||||   || ||||||||| |||||||| || ||||| ||||||||||  ||||||||    
T  5131022 attatgattttcaaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaa 5131093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University