View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_31 (Length: 355)
Name: NF17837_high_31
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 46736804 - 46736481
Alignment:
| Q |
17 |
acaaatgacagttgaaggctgcaacatacctccgatatttccatagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataata |
116 |
Q |
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| T |
46736804 |
acaaatgacagttgaaggctgcaacatacctccgatatttccatagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataatt |
46736705 |
T |
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| Q |
117 |
atactcattaaaaattgagtatgactattatgggccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttg |
216 |
Q |
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| T |
46736704 |
atactcattaaaaattgagtatgattattatgggccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttg |
46736605 |
T |
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| Q |
217 |
cttgtatcaatttcttccaacattgtcaccacatctttcatttccggacgcttttctggattcttgtcccagcatcttttcattatacctgctaatgcac |
316 |
Q |
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| T |
46736604 |
cttgtatcaattttttccaacattgtcaccacatctttcatttccggacgcttttctggattcttgtcccagcatcttttcattatatctgctaatgcac |
46736505 |
T |
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| Q |
317 |
ttggacagcatctaggaatctctg |
340 |
Q |
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| T |
46736504 |
ttggacagcatctaggaatctctg |
46736481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 986262 - 986195
Alignment:
| Q |
199 |
atcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacg |
266 |
Q |
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| T |
986262 |
atcattccaccacctttgcttgtatccagtgcttctagcattatcaccacatccttcatttccggacg |
986195 |
T |
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