View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_32 (Length: 355)
Name: NF17837_high_32
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 2871440 - 2871763
Alignment:
| Q |
14 |
aatatgctgaagagaaaagagcaatagttgaggctcaaaaaagggaagaatgtcttgagctagaggaaacagctgcaaagtttcgtagtcgtggagttgc |
113 |
Q |
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| T |
2871440 |
aatatgctgaagagaaaagagcaatagttgaggctcaaaaaagggaagaatgtcttgaactagaggaaacagctgcaaagtttcgtagtcgtggagttgc |
2871539 |
T |
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| Q |
114 |
accaaagaaattgtttggatgctttagtgcttaagnnnnnnnnaagtcaaataagaagaattgaattcttgatggattggttttacatgatgttcaatta |
213 |
Q |
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| T |
2871540 |
accaaagaaattgtttggatgctttagtgcttaagttttttttaagccaaataagaagaattgaattcttgatggattggttttacatgatgttcaatta |
2871639 |
T |
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| Q |
214 |
tgtatacttttaaaagtgtggttttgttcttatatgtattgtttgagttaacaaagaattccacatttgataatcaataacatttactactttcccttta |
313 |
Q |
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| T |
2871640 |
tgtatacttttaaaagtgtggttttgttcttatatgtattgtttgagttaacaaagaattccacatttgataatcaataacatttactactttcccttta |
2871739 |
T |
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| Q |
314 |
attgtattattaagggaacaatac |
337 |
Q |
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| T |
2871740 |
attgtatcattaagggaacaatac |
2871763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 2876565 - 2876610
Alignment:
| Q |
77 |
aggaaacagctgcaaagtttcgtagtcgtggagttgcaccaaagaa |
122 |
Q |
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| T |
2876565 |
aggaaacatctgctaagtttcgtagccgtggagttgcaccaaagaa |
2876610 |
T |
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