View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17837_high_39 (Length: 321)
Name: NF17837_high_39
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 51115223 - 51114942
Alignment:
| Q |
19 |
atagcatacatgagagacttgtgtattcaataatcaagtcaccacaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaaca |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115223 |
atagcatacatgagagacttgt--attcaataatcaagtcac-acaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaaca |
51115127 |
T |
|
| Q |
119 |
aaatatacaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaaccacctaatttccaaactcagga |
218 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51115126 |
aaatgtacacctaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgaaacagagaacaaccacctaatttccaaactcagga |
51115027 |
T |
|
| Q |
219 |
tttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115026 |
tttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaa |
51114942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 1119198 - 1119125
Alignment:
| Q |
125 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaacca |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaatactgaaacagagaacaacca |
1119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
108 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
162 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University