View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_high_41 (Length: 318)

Name: NF17837_high_41
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_high_41
NF17837_high_41
[»] chr4 (17 HSPs)
chr4 (18-161)||(28885502-28885645)
chr4 (194-296)||(32335915-32336017)
chr4 (194-296)||(33978822-33978924)
chr4 (194-296)||(14612249-14612351)
chr4 (195-296)||(7540201-7540302)
chr4 (195-296)||(14784671-14784771)
chr4 (195-296)||(40259677-40259778)
chr4 (200-264)||(47645513-47645577)
chr4 (225-293)||(43793746-43793812)
chr4 (221-296)||(25618740-25618813)
chr4 (225-296)||(35475412-35475481)
chr4 (225-285)||(9195787-9195845)
chr4 (225-296)||(13397787-13397856)
chr4 (229-296)||(19232455-19232521)
chr4 (218-293)||(36729203-36729277)
chr4 (229-285)||(55780513-55780567)
chr4 (229-285)||(55844693-55844747)
[»] chr5 (18 HSPs)
chr5 (194-296)||(38545388-38545490)
chr5 (195-296)||(18739807-18739908)
chr5 (194-296)||(20732643-20732744)
chr5 (194-296)||(38322291-38322393)
chr5 (193-276)||(26214093-26214176)
chr5 (194-263)||(16287577-16287646)
chr5 (194-263)||(42757550-42757619)
chr5 (225-296)||(31055426-31055495)
chr5 (225-296)||(40428751-40428820)
chr5 (225-296)||(16901109-16901178)
chr5 (260-296)||(2373301-2373337)
chr5 (225-285)||(10379404-10379462)
chr5 (225-296)||(245717-245786)
chr5 (228-279)||(462891-462941)
chr5 (220-263)||(8674000-8674043)
chr5 (225-296)||(18695126-18695195)
chr5 (228-296)||(17825609-17825676)
chr5 (194-230)||(19867009-19867045)
[»] chr7 (17 HSPs)
chr7 (194-296)||(38722915-38723017)
chr7 (194-295)||(45782135-45782237)
chr7 (194-296)||(9154410-9154512)
chr7 (194-296)||(24730822-24730924)
chr7 (195-286)||(14196944-14197036)
chr7 (194-296)||(35533486-35533589)
chr7 (195-293)||(46267361-46267458)
chr7 (196-286)||(46281810-46281899)
chr7 (225-296)||(20636742-20636811)
chr7 (225-296)||(35337634-35337703)
chr7 (225-296)||(41452361-41452430)
chr7 (225-296)||(48176075-48176144)
chr7 (217-296)||(5087110-5087188)
chr7 (225-296)||(23439716-23439786)
chr7 (245-296)||(36746615-36746665)
chr7 (228-278)||(44078000-44078049)
chr7 (225-294)||(27869309-27869376)
[»] chr1 (9 HSPs)
chr1 (193-296)||(18106820-18106923)
chr1 (194-281)||(23279720-23279807)
chr1 (194-293)||(16858419-16858520)
chr1 (225-296)||(19078037-19078106)
chr1 (225-296)||(19125927-19125996)
chr1 (225-296)||(43706766-43706835)
chr1 (225-296)||(3616922-3616991)
chr1 (225-296)||(46432328-46432397)
chr1 (225-296)||(24962076-24962145)
[»] chr2 (17 HSPs)
chr2 (194-296)||(11919737-11919839)
chr2 (194-296)||(35844808-35844910)
chr2 (194-293)||(19618888-19618987)
chr2 (194-294)||(9775475-9775575)
chr2 (194-294)||(22698961-22699061)
chr2 (194-286)||(28319128-28319219)
chr2 (203-286)||(74924-75007)
chr2 (225-296)||(4104936-4105006)
chr2 (225-296)||(15700870-15700939)
chr2 (228-296)||(14743443-14743510)
chr2 (217-296)||(15147827-15147905)
chr2 (225-296)||(15735187-15735256)
chr2 (222-280)||(33199572-33199630)
chr2 (178-207)||(75076-75105)
chr2 (227-296)||(25298913-25298980)
chr2 (239-296)||(38716329-38716385)
chr2 (225-285)||(4587984-4588042)
[»] scaffold0005 (2 HSPs)
scaffold0005 (194-296)||(205026-205128)
scaffold0005 (195-296)||(54959-55059)
[»] scaffold0064 (1 HSPs)
scaffold0064 (194-286)||(54461-54552)
[»] chr6 (12 HSPs)
chr6 (194-296)||(19176468-19176569)
chr6 (217-286)||(23124842-23124910)
chr6 (225-296)||(8412881-8412950)
chr6 (217-294)||(20863842-20863918)
chr6 (225-296)||(3118802-3118871)
chr6 (225-296)||(25819807-25819876)
chr6 (239-296)||(24051144-24051200)
chr6 (194-242)||(13118483-13118531)
chr6 (229-296)||(26710419-26710484)
chr6 (227-296)||(12427356-12427425)
chr6 (225-286)||(32451849-32451908)
chr6 (222-266)||(9620538-9620582)
[»] chr3 (20 HSPs)
chr3 (194-295)||(2683038-2683140)
chr3 (194-286)||(24312786-24312878)
chr3 (204-296)||(32463531-32463623)
chr3 (194-293)||(48743246-48743347)
chr3 (217-293)||(3820996-3821071)
chr3 (225-296)||(6927593-6927662)
chr3 (225-285)||(46673170-46673228)
chr3 (225-296)||(23428731-23428800)
chr3 (225-296)||(28173841-28173910)
chr3 (225-296)||(40836290-40836360)
chr3 (225-294)||(30155259-30155326)
chr3 (225-285)||(10743530-10743588)
chr3 (225-296)||(3328925-3328994)
chr3 (228-295)||(25179704-25179769)
chr3 (225-296)||(26628137-26628206)
chr3 (225-296)||(48907404-48907473)
chr3 (225-293)||(13081017-13081083)
chr3 (228-296)||(26633471-26633537)
chr3 (225-296)||(33279697-33279766)
chr3 (225-285)||(48860825-48860883)
[»] chr8 (11 HSPs)
chr8 (196-284)||(32731372-32731460)
chr8 (206-296)||(30199466-30199556)
chr8 (225-296)||(4518979-4519048)
chr8 (199-298)||(8137609-8137708)
chr8 (225-296)||(19391499-19391568)
chr8 (225-296)||(19924388-19924457)
chr8 (225-296)||(38630178-38630247)
chr8 (225-286)||(4423151-4423211)
chr8 (225-296)||(5192383-5192452)
chr8 (194-296)||(16357646-16357748)
chr8 (225-294)||(18881617-18881685)
[»] scaffold0173 (1 HSPs)
scaffold0173 (194-293)||(22877-22977)
[»] scaffold0010 (1 HSPs)
scaffold0010 (194-296)||(128463-128563)
[»] scaffold0084 (1 HSPs)
scaffold0084 (222-286)||(4637-4701)
[»] scaffold0062 (2 HSPs)
scaffold0062 (225-296)||(49782-49851)
scaffold0062 (225-296)||(62321-62390)
[»] scaffold0607 (1 HSPs)
scaffold0607 (239-296)||(2161-2217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (225-296)||(19405-19474)
[»] scaffold1875 (1 HSPs)
scaffold1875 (229-293)||(871-934)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 28885645 - 28885502
Alignment:
Q  18 atgaatatgcttgagctaactgaatattcacttaaactttcctacaaaacaaggagaaaatttctagttttttccaactctttcagtgagaactatgcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |    
T  28885645 atgaatatgcttgagctaactgaatattcacttaaactttcctacaaaacaaggagaaaatttctagttttttccaactctttcacttagaactatgcca 28885546  T
Q  118 atttgtggaacctttgaaactctgcagtccggcagtcaaattaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28885545 atttgtggaacctttgaaactctgcagtccggcagtcaaattaa 28885502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 32335915 - 32336017
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||    
T  32335915 gcaattttgaccccttaattttgccatgtttagggatatatgctcttttggcctattatctttacaaaaaaattgcgattatgacccctttttcggaaca 32336014  T
Q  294 cgt 296  Q
    |||    
T  32336015 cgt 32336017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 33978822 - 33978924
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| |||| ||||||||||||| ||||||||   |||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  33978822 gcaattttgaccccctaatattgccatgtttagcgaaatatgcatttttggcctcttatctttacaaaaaagttgcgattatgaccccttttttgggaca 33978921  T
Q  294 cgt 296  Q
    |||    
T  33978922 cgt 33978924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 14612351 - 14612249
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||| || |||| ||||  |||||    
T  14612351 gcaattttgaccccctaattttgccatgtttagggaaatatgctcttttggccccttatctttaccaaaaagttacgattttggccccctttttaggaca 14612252  T
Q  294 cgt 296  Q
    |||    
T  14612251 cgt 14612249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 7540302 - 7540201
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||| ||| |||| ||| || |||| || |||||||||||||||||| |||||||    
T  7540302 caattttgaccccctatttttgccatgtttagggaaatatgctcttttgaccctttatctttgcataaaaattccgattatgaccccttttttgggacac 7540203  T
Q  295 gt 296  Q
    ||    
T  7540202 gt 7540201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 14784771 - 14784671
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||  |||||||| |||||||    
T  14784771 caattttaaccccctaattttgctatgtttagggaaatatgtttttttgaccccttatctttacaaaaaatttgcaattttg-gcccttttttgggacac 14784673  T
Q  295 gt 296  Q
    ||    
T  14784672 gt 14784671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 40259778 - 40259677
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||||| |||| ||||||||||||| ||||||||   ||||| |||||||| ||||||||||| ||| | |||||||| |||||| |||||||    
T  40259778 caattttgaccccctaatattgccatgtttagcgaaatatgcatttttgcccccttatctttacaaaaaagttgtgcttatgacctcttttttgggacac 40259679  T
Q  295 gt 296  Q
    ||    
T  40259678 gt 40259677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 47645513 - 47645577
Alignment:
Q  200 ttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaa 264  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||    
T  47645513 ttgaccccctaattttgccatgtttaggaaaatatgctcttttggccccttatctttaccaaaaa 47645577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 43793812 - 43793746
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||||||||| ||||| ||||||||||||||||||| || |||| |||||||||||||| ||||||    
T  43793812 agggaaatatgtt-ttttgaccccttatatttacaaaaagtt-gcgaatatgaccccttttttgggaca 43793746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 25618813 - 25618740
Alignment:
Q  221 gtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||||| ||||||| |||||||| ||||| ||||| | ||||||||| ||||||||| |||||||||    
T  25618813 gtttagggaaatatgctcttttgaccccttatctttac-aaaaagtggcgattatggccccttttt-gggacacgt 25618740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 35475412 - 35475481
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| |  ||||||||||||||||||| |||||||||    
T  35475412 agggaaatatgtt-ttttgaccccttatctttacaaaaagta-gcgattatgaccccttttttgggacacgt 35475481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 9195845 - 9195787
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||    
T  9195845 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgacccctttt 9195787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 13397856 - 13397787
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  13397856 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 13397787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 19232521 - 19232455
Alignment:
Q  229 aaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||| ||||  |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  19232521 aaatatgttttttttaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 19232455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 36729277 - 36729203
Alignment:
Q  218 catgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||||||| ||||||| |||||||| ||  |||||| ||| |||||||||||  ||||| ||||||    
T  36729277 catgtttagggaaatatgatcttttgaccccttatcttctcaaaaagttt-cgattatgaccttttttttgggaca 36729203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 55780513 - 55780567
Alignment:
Q  229 aaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||    
T  55780513 aaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgacccctttt 55780567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 55844693 - 55844747
Alignment:
Q  229 aaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||    
T  55844693 aaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgacccctttt 55844747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 38545490 - 38545388
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||    
T  38545490 gcaattttgaccccttaattttgccatgtttagggatatatgctcttttggcccattatctttacaaaaaaattgcgattatgacccctttttcgggaca 38545391  T
Q  294 cgt 296  Q
    |||    
T  38545390 cgt 38545388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 18739807 - 18739908
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||  ||||| || ||||| |||||||||||| |||||||    
T  18739807 caattttgaccccttaattttgccatgtttagggaaatatgctcttttggccctttatctttatcaaaaagttacgattttgaccccttttttgggacac 18739906  T
Q  295 gt 296  Q
    ||    
T  18739907 gt 18739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 20732744 - 20732643
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||| |||||||| || ||||||| | ||||||    
T  20732744 gcaattttgaccccctaattttgccatgtttagggaaatatgctcttttgg-cccttatctttaccaaaaagttgcgattttggcccctttgttgggaca 20732646  T
Q  294 cgt 296  Q
    |||    
T  20732645 cgt 20732643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 38322291 - 38322393
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| |||||||||||||||||||||||| |  | ||||| || ||||| ||||||||||| |||||||| |||||||||||| ||||||    
T  38322291 gcaattttgaccccctaattttgccatgtttagggaaatttagttttttgacctcttatctttacaaaaaagttgcgattttgaccccttttttgggaca 38322390  T
Q  294 cgt 296  Q
    |||    
T  38322391 cgt 38322393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 26214093 - 26214176
Alignment:
Q  193 agcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatg 276  Q
    ||||||||||||||| || ||||| |||||||||| ||||||||| |||| ||||||||| ||| ||||||| |||||||||||    
T  26214093 agcaattttgaccccctatttttgtcatgtttaggtaaatatgttttttttgccccttatcttttcaaaaaagttgcgattatg 26214176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 16287577 - 16287646
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaa 263  Q
    |||||||||||||| ||||||||||||||||||  ||||||| |||||||| ||||||| ||||||||||    
T  16287577 gcaattttgaccccctaattttgccatgtttagaaaaatatgctcttttggtcccttatctttacaaaaa 16287646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 42757550 - 42757619
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaa 263  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||| ||| |||| ||||||||||    
T  42757550 gcaattttaaccccctaattttgccatgtttaggaaaatttgttcttttgaccctttatctttacaaaaa 42757619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 31055495 - 31055426
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  31055495 agggaaatatgtt-ttttgaccccttatctttacaaaaaatt-gcgattatgaccccttttctgggacacgt 31055426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 40428820 - 40428751
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  40428820 agggaaatatgct-ttttgaccccttatctttacaaaaaatt-gcgattatgaccccttttttgggacacgt 40428751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 16901178 - 16901109
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  16901178 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 16901109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 2373301 - 2373337
Alignment:
Q  260 aaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2373301 aaaaatttgcgattatgacccctttttggggacacgt 2373337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 10379404 - 10379462
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||    
T  10379404 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgacccctttt 10379462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 245717 - 245786
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  245717 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 245786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 462891 - 462941
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacc 279  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  462891 gaaatatgttcttttgaccccttatctttac-aaaaagttgcgattatgacc 462941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 8674043 - 8674000
Alignment:
Q  220 tgtttagggaaatatgttcttttggccccttatatttacaaaaa 263  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||    
T  8674043 tgtttagggaaatatgctcttttgaccccttatctttacaaaaa 8674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 18695126 - 18695195
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  18695126 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 18695195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 17825676 - 17825609
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||||||||||| ||| |||| ||  |||||| || ||||||||| ||||||||| |||||||||    
T  17825676 gaaatatgttcttttgaccctttatcttgtcaaaaagtt-gcgattatggccccttttttgggacacgt 17825609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 19867045 - 19867009
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaa 230  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  19867045 gcaattttgaccccctaagtttgccatgtttagggaa 19867009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 38723017 - 38722915
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||| |||||||| || ||||||||| ||||||    
T  38723017 gcaattttgaccccctaattttgccatgtttagggaaatatgctcttttggacccttatctttaccaaaaagttgcgattttggccccttttttgggaca 38722918  T
Q  294 cgt 296  Q
    |||    
T  38722917 cgt 38722915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 45782237 - 45782135
Alignment:
Q  194 gcaattttgaccccttaattttgccatgt-ttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggac 292  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  45782237 gcaattttgaccccttaattttgccatgtgttaggaaaatatgctcttttcgtcccttatctttacaaaaaaattgcgattatggccccttttttgggac 45782138  T
Q  293 acg 295  Q
    |||    
T  45782137 acg 45782135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 9154512 - 9154410
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||||| |||| || ||||||||||||||| |||||||| |||||||| ||||||| ||| ||||||| ||||||||||| ||||||||  ||||||    
T  9154512 gcaattttggccccctatttttgccatgtttagagaaatatgctcttttggtcccttatctttgcaaaaaagttgcgattatggccccttttatgggaca 9154413  T
Q  294 cgt 296  Q
    |||    
T  9154412 cgt 9154410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 24730822 - 24730924
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||  |||||||| |||||||| ||||||||| |||||||||||| ||| ||||||||||| ||||||  |||  |||||||| || |||    
T  24730822 gcaattttgaccctctaattttgtcatgtttaaggaaatatgctcttttggccccgtatctttacaaaaaagttgcgaccatggtcccttttttggaaca 24730921  T
Q  294 cgt 296  Q
    |||    
T  24730922 cgt 24730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 14197036 - 14196944
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaa-aaaatttgcgattatgaccccttttt 286  Q
    ||||||| ||| | |||||||||| |||||||||||||||| ||||||| ||| |||| ||||||| |||| |||| |||||| |||||||||    
T  14197036 caatttttaccgcctaattttgccttgtttagggaaatatgctcttttgaccctttatctttacaaaaaaagttgcaattatggccccttttt 14196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 35533486 - 35533589
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatt--tacaaaaaatttgcgattat-gacccctttttcggg 290  Q
    ||||||||||||||| | |||||||||||||||| ||||||||| |||| ||||||||| ||  || |||||| |||||||||| | ||||||||| |||    
T  35533486 gcaattttgacccct-atttttgccatgtttaggtaaatatgtt-tttttgccccttatctttgtaaaaaaaaattgcgattatggcccccttttttggg 35533583  T
Q  291 acacgt 296  Q
    ||||||    
T  35533584 acacgt 35533589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 46267458 - 46267361
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||| |||||| |||||| || |||||||| ||||||| || |||| ||  |||| ||||||||||| ||||||||||| ||||||||| ||||||    
T  46267458 caatttttacccct-aattttaccttgtttaggaaaatatgctcatttgacctattatctttacaaaaaagttgcgattatggccccttttttgggaca 46267361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 46281899 - 46281810
Alignment:
Q  196 aattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    |||||||||||  ||||||||||||||| ||| ||||||||||||||| ||  |||| ||||||||||| |||| ||||| |||| |||||    
T  46281899 aattttgaccctctaattttgccatgttgagg-aaatatgttcttttgaccggttatctttacaaaaaagttgcaattataaccctttttt 46281810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 20636742 - 20636811
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  20636742 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 20636811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 35337703 - 35337634
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  35337703 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 35337634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 41452430 - 41452361
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  41452430 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 41452361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 48176144 - 48176075
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  48176144 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 48176075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 5087110 - 5087188
Alignment:
Q  217 ccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||| |||||||||||| | ||||| |||||||| ||| | ||||| |||||||||||| |||| ||| |||||||||    
T  5087110 ccatgtatagggaaatatgattttttgaccccttatcttttc-aaaaagttgcgattatgatccctattttgggacacgt 5087188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 23439716 - 23439786
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| |||||||  ||||||| |||  |||||| ||||||||||||||||| ||| |||||||||    
T  23439716 agggaaatatgctcttttgatcccttatctttt-aaaaaagttgcgattatgacccctgttttgggacacgt 23439786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 36746665 - 36746615
Alignment:
Q  245 ccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  36746665 ccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 36746615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 44078049 - 44078000
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgac 278  Q
    |||||||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  44078049 gaaatatgtt-ttttgaccccttatctttacaaaaaagttgcgattatgac 44078000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 27869376 - 27869309
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||    
T  27869376 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacac 27869309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 18106923 - 18106820
Alignment:
Q  193 agcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggac 292  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||||||  ||||||| ||| ||||||| ||||||||||| ||||||||| |||||    
T  18106923 agcaattttgaccccctatttttgccatgtttagggaaatatgctcttttgatcccttatctttgcaaaaaaattgcgattatggccccttttttgggac 18106824  T
Q  293 acgt 296  Q
    ||||    
T  18106823 acgt 18106820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 23279807 - 23279720
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccc 281  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| ||||||||| | |||| |||||| ||||    
T  23279807 gcaattttgaccccttaattttgccatgtttaggaaaatatgctcttttgcccctttatctttacaaaatagttgcaattatggcccc 23279720  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 293
Target Start/End: Original strand, 16858419 - 16858520
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgt--tcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcggga 291  Q
    |||||||| ||||| ||||||| || |||||||| |||||| |  |||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||    
T  16858419 gcaatttttaccccctaattttaccttgtttaggaaaatatatgctcttttggccccttatctttacaaaaaagttgcgattatggccccttttttggga 16858518  T
Q  292 ca 293  Q
    ||    
T  16858519 ca 16858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 19078106 - 19078037
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  19078106 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 19078037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 19125996 - 19125927
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  19125996 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 19125927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 43706835 - 43706766
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || |||||||||||||||||| ||||||||||    
T  43706835 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttccgggacacgt 43706766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 3616922 - 3616991
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  3616922 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 3616991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 46432397 - 46432328
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  46432397 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 46432328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 24962076 - 24962145
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  24962076 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 24962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 11919737 - 11919839
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||| |||||||| ||| | |||||| ||||||    
T  11919737 gcaattttgaccccctaattttgccatgtttaggaaaatatgctcttttgcccccttatctttacaaaaaagttgcgattttgatcacttttttgggaca 11919836  T
Q  294 cgt 296  Q
    |||    
T  11919837 cgt 11919839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 35844808 - 35844910
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| |||||||| |||||||||  ||||||| |||||||||||||||| ||||||||||| ||| |||| || ||||||||| ||| ||    
T  35844808 gcaattttgaccccctaattttgtcatgtttagaaaaatatgctcttttggccccttatctttacaaaaaagttgtgattttggccccttttttggggca 35844907  T
Q  294 cgt 296  Q
    |||    
T  35844908 cgt 35844910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 19618987 - 19618888
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||| ||||| ||||||||||  || |||||||||||| ||||||  |||||||| ||||||||||| ||| | ||||||||||||||| ||||||    
T  19618987 gcaatttttaccccctaattttgcctcgtgtagggaaatatgctcttttaaccccttatctttacaaaaaagttgtgtttatgaccccttttttgggaca 19618888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 9775575 - 9775475
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||| ||||| |||||||| |||||||||| ||||||| |||| || |||||||| ||| ||||||  ||| |||| |||||||||||| ||||||    
T  9775575 gcaattttaaccccctaattttgtcatgtttaggaaaatatgctcttctgaccccttatctttgcaaaaatgttgtgattttgaccccttttttgggaca 9775476  T
Q  294 c 294  Q
    |    
T  9775475 c 9775475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 22699061 - 22698961
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||| ||||| |||||||| |||||||||| ||||||| |||| || |||||||| ||| ||||||  ||| |||| |||||||||||| ||||||    
T  22699061 gcaattttaaccccctaattttgtcatgtttaggaaaatatgctcttctgaccccttatctttgcaaaaatgttgtgattttgaccccttttttgggaca 22698962  T
Q  294 c 294  Q
    |    
T  22698961 c 22698961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 28319219 - 28319128
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    |||||||||||||  ||| ||||||||||||||||||||||| | ||||||  |||||| ||||||||| | ||||||||||||||| |||||    
T  28319219 gcaattttgaccctctaagtttgccatgtttagggaaatatgcttttttgg-tccttatctttacaaaatagttgcgattatgacccattttt 28319128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 74924 - 75007
Alignment:
Q  203 accccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    ||||| |||||||| ||  |||||| ||||||| ||||||| ||  |||| ||||||||||| |||||||||||||||||||||    
T  74924 accccctaattttgtcacctttaggaaaatatgctcttttgcccttttatctttacaaaaaagttgcgattatgaccccttttt 75007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 4105006 - 4104936
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||| |||||| ||||||| | ||||||||||||||||| || ||||||||||||||||||| || ||||||    
T  4105006 aggggaatatgctcttttgacaccttatatttacaaaaagtt-gcgattatgacccctttttaggaacacgt 4104936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 15700870 - 15700939
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  15700870 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 15700939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 14743443 - 14743510
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||| |||||||||||||||| ||| | ||||||||||||||||  ||||| ||| |||||||||    
T  14743443 gaaatatgctcttttggccccttatttttgc-aaaaatttgcgattatagcccctattttgggacacgt 14743510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 15147827 - 15147905
Alignment:
Q  217 ccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||||||||| |||||||  || |||| || || ||||| ||||||||||  ||||||||| |||||||||    
T  15147827 ccatgtttagggaaatatgctcttttgatccattatcttaac-aaaaagttgcgattatagccccttttttgggacacgt 15147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 15735187 - 15735256
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||  ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  15735187 agggaaatatgta-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 15735256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 33199572 - 33199630
Alignment:
Q  222 tttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccc 280  Q
    |||||||||||||| ||||||||||  |||| ||||||||||  |||||||| ||||||    
T  33199572 tttagggaaatatgctcttttggccttttatctttacaaaaatattgcgattttgaccc 33199630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 75105 - 75076
Alignment:
Q  178 tatgtttgccaccgtagcaattttgacccc 207  Q
    ||||||||||||||||||||||||||||||    
T  75105 tatgtttgccaccgtagcaattttgacccc 75076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 25298980 - 25298913
Alignment:
Q  227 ggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| |||||  ||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  25298980 ggaaatatgtt-ttttgatcccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 25298913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 38716329 - 38716385
Alignment:
Q  239 ttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  38716329 ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 38716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 4587984 - 4588042
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||||||| ||||  |||||||| |||||||||| || ||||||||||||||||||    
T  4587984 agggaaatatgtt-ttttaaccccttatctttacaaaaagtt-gcgattatgacccctttt 4588042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 205026 - 205128
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||| || |||| ||||  |||||    
T  205026 gcaattttgaccccctaattttgccatgtttagggaaatatgctcttttggccccttatctttaccaaaaagttacgattttggccccctttttaggaca 205125  T
Q  294 cgt 296  Q
    |||    
T  205126 cgt 205128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 54959 - 55059
Alignment:
Q  195 caattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||  |||||||| |||||||    
T  54959 caattttaaccccctaattttgctatgtttagggaaatatgtttttttgaccccttatctttacaaaaaatttgcaattttg-gcccttttttgggacac 55057  T
Q  295 gt 296  Q
    ||    
T  55058 gt 55059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 54461 - 54552
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    |||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||||    
T  54461 gcaatttttaccccctaattttgccttgtttagggaaatatgctcttttggccccttatctttac-aaaaagttgcgattatggccccttttt 54552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 19176468 - 19176569
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||| | | |||| ||||||||||| |||||| |||||||| ||||| ||||||    
T  19176468 gcaattttgaccccataattttgccatgtttagggaaatatgctattttgacacattatctttacaaaaaagttgcgactatgacccattttt-gggaca 19176566  T
Q  294 cgt 296  Q
    |||    
T  19176567 cgt 19176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 23124910 - 23124842
Alignment:
Q  217 ccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    ||||||||||| ||||||| ||||||| |||||||| ||||| ||||| |||||||||||||||||||||    
T  23124910 ccatgtttaggaaaatatgctcttttgaccccttatctttac-aaaaagttgcgattatgaccccttttt 23124842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 8412881 - 8412950
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  8412881 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 8412950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 20863918 - 20863842
Alignment:
Q  217 ccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||| || |||| ||||||| |||||||| ||||| ||||| ||||||||||| ||||||||| |||||||    
T  20863918 ccatgtttaggaaattatgctcttttgaccccttatctttac-aaaaagttgcgattatggccccttttttgggacac 20863842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 3118802 - 3118871
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||||||  |||||||||    
T  3118802 agggaaatatgtt-ttttgacctcttatctttacaaaa-atttgcgattatgaccccttttctgggacacgt 3118871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 25819807 - 25819876
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  25819807 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 25819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 24051144 - 24051200
Alignment:
Q  239 ttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||| ||||||||||||||||||| || |||||||||||| |||||| |||||||||    
T  24051144 ttttgaccccttatatttacaaaaagtt-gcgattatgacctcttttttgggacacgt 24051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 13118483 - 13118531
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttctttt 242  Q
    ||||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  13118483 gcaattttgaccccttattttttcaatgtttagggaaatatgctctttt 13118531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 26710484 - 26710419
Alignment:
Q  229 aaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  26710484 aaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 26710419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 12427356 - 12427425
Alignment:
Q  227 ggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| ||||  ||| |||| ||||||||||| |||||||| |||||| || || |||||||||    
T  12427356 ggaaatatgttttttttaccctttatctttacaaaaaagttgcgattttgacccattctttgggacacgt 12427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 32451849 - 32451908
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    ||||||||||| | ||||| |||||||| |||||||||| || |||||||||||||||||||    
T  32451849 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttt 32451908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 9620538 - 9620582
Alignment:
Q  222 tttagggaaatatgttcttttggccccttatatttacaaaaaatt 266  Q
    ||||| |||||| | |||||||||||||||| |||||||||||||    
T  9620538 tttagagaaataagctcttttggccccttatttttacaaaaaatt 9620582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 2683038 - 2683140
Alignment:
Q  194 gcaattttgaccccttaattttgccatgt-ttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggac 292  Q
    ||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| | ||||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  2683038 gcaattttgaccctttaattttgtcatgtgttaggaaaatatgctcttttcgtcccttatctttacaaaaaaattgcgattatggccccttttttgggac 2683137  T
Q  293 acg 295  Q
    |||    
T  2683138 acg 2683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 24312878 - 24312786
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| ||||||||| | |||| |||||| |||| ||||    
T  24312878 gcaattttgaccccttaattttgccatgtttaggaaaatatgctcttttgcccctttatctttacaaaatagttgcaattatggccccctttt 24312786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 32463623 - 32463531
Alignment:
Q  204 ccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||| |||||||||||||||||||||||||   ||||||| |||||||| ||||||||||| |||||||| |||||| ||||| |||||||||    
T  32463623 ccccctaattttgccatgtttagggaaatacagtcttttgaccccttatctttacaaaaaagttgcgattttgaccctttttttgggacacgt 32463531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 48743347 - 48743246
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaa--aaaatttgcgattatgacccctttttcggga 291  Q
    |||||||||||||| |||||||||||||||||||||||||   ||||||| ||| |||| |||||||  |||| ||| |||| |||||||||||| ||||    
T  48743347 gcaattttgaccccctaattttgccatgtttagggaaatagagtcttttgacccattatctttacaaaaaaaagttgtgattttgaccccttttttggga 48743248  T
Q  292 ca 293  Q
    ||    
T  48743247 ca 48743246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 3820996 - 3821071
Alignment:
Q  217 ccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  3820996 ccatgtttagggaaatatgctcttttgaccctttatctttac-aaaaagttgcgattatgaccccttttttgggaca 3821071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 6927593 - 6927662
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  6927593 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 6927662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 46673228 - 46673170
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    |||||||||||||  |||| |||||||| ||||||||||| ||||||||||||||||||||    
T  46673228 agggaaatatgtt--tttgaccccttatctttacaaaaaagttgcgattatgacccctttt 46673170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 23428800 - 23428731
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  23428800 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 23428731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 28173910 - 28173841
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  28173910 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 28173841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 40836360 - 40836290
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||||| |  |||||| ||||||||||| ||||||||| |||||||||    
T  40836360 agggaaatatgtt-ttttgaccccttatatctcaaaaaaagttgcgattatggccccttttttgggacacgt 40836290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 30155326 - 30155259
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||    
T  30155326 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacac 30155259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 10743530 - 10743588
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||    
T  10743530 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgacccctttt 10743588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 3328994 - 3328925
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||||||  |||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  3328994 agggaaatatgc-cttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 3328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 25179704 - 25179769
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacg 295  Q
    |||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| ||||||||    
T  25179704 gaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacg 25179769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 26628206 - 26628137
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  26628206 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 26628137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 48907473 - 48907404
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||| |||||| ||||||||||| ||||||||| |||||||||    
T  48907473 agggaaatatgct-ttttgaccccttatcttta-aaaaaagttgcgattatggccccttttttgggacacgt 48907404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 13081017 - 13081083
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| ||||||    
T  13081017 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggaca 13081083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 26633537 - 26633471
Alignment:
Q  228 gaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| ||| |||||    
T  26633537 gaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttggggcacgt 26633471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 33279766 - 33279697
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| |||||||  |||||||||||||  |||| || |||||||||||| ||||| | |||||||    
T  33279766 agggaaatatgctcttttgatcccttatatttac--aaaagttacgattatgaccctttttttgagacacgt 33279697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 48860825 - 48860883
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttt 285  Q
    ||||||||||||| ||||| |||||||| |||||||||| || |||||||||| |||||||    
T  48860825 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgatccctttt 48860883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 32731372 - 32731460
Alignment:
Q  196 aattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttt 284  Q
    |||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||| ||||| ||||| || ||||| || |||||||    
T  32731372 aattttgaccccctaatttttccatgtttaggaaaatatgctcttttggccccttatctttaccaaaaagttacgattttggccccttt 32731460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 30199466 - 30199556
Alignment:
Q  206 ccttaattttgccatgtttagggaaatatgttcttttggccccttatatttac-aaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    |||||||||||||||||||||| ||||||| ||||||  |||||||| ||||| |||||| ||| |||| |||||||||||| |||||||||    
T  30199466 ccttaattttgccatgtttaggaaaatatgctcttttaaccccttatctttacaaaaaaagttgtgattttgaccccttttt-gggacacgt 30199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 4519048 - 4518979
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  4519048 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 4518979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 8137609 - 8137708
Alignment:
Q  199 tttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgttg 298  Q
    ||||||||| || |||||||| ||||||||||||||| ||||||| |||||||| ||  ||||| | |||| |||||| | | ||||| | |||||||||    
T  8137609 tttgaccccatatttttgccacgtttagggaaatatgctcttttgcccccttatcttcgcaaaatagttgcaattatggctcattttttgagacacgttg 8137708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 19391568 - 19391499
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  19391568 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 19391499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 19924388 - 19924457
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  19924388 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 19924457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 38630178 - 38630247
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  38630178 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 38630247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 4423211 - 4423151
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    ||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||||||| |||||    
T  4423211 agggaaatatgatcttttgaccccttatcttttcaaaaaa-ttgcgattatgaccctttttt 4423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 5192452 - 5192383
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| || ||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  5192452 agggaaatatgtt-ttttgacctcttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 5192383  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 16357646 - 16357748
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatattta-caaaaaatttgcgattatgacccctttttcgggac 292  Q
    ||||||||||| |  ||||||| |||| || ||||||||||||||||||  ||| |||| ||||  |||||| ||| |||||||||| |||||| |||||    
T  16357646 gcaattttgactctctaattttaccatattgagggaaatatgttcttttaaccctttatctttataaaaaaagttgtgattatgaccgcttttt-gggac 16357744  T
Q  293 acgt 296  Q
    ||||    
T  16357745 acgt 16357748  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 18881685 - 18881617
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacac 294  Q
    ||||||||| | ||||||| |||||||| |||||||||| || || ||||||||||||| || |||||||    
T  18881685 agggaaatacgctcttttgaccccttatctttacaaaaagtt-gcaattatgaccccttatttgggacac 18881617  T

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Target: scaffold0173 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 293
Target Start/End: Original strand, 22877 - 22977
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttac-aaaaaatttgcgattatgacccctttttcgggac 292  Q
    |||||||||||||| || |||||||||||||||| ||||||||| |||| ||||||||| ||| | |||||| |||| |||||| ||| ||||| |||||    
T  22877 gcaattttgaccccctatttttgccatgtttaggtaaatatgttttttttgccccttatctttgcaaaaaaagttgcaattatggcccattttttgggac 22976  T
Q  293 a 293  Q
    |    
T  22977 a 22977  T

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Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 128563 - 128463
Alignment:
Q  194 gcaattttgaccccttaattttgccatgtttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    |||||||||||| | |||||||| |||||||||| |||||   ||||||| |||||  ||| ||||||||| |||||||| |||||||||||| || |||    
T  128563 gcaattttgaccacctaattttgacatgtttaggaaaatacagtcttttgacccct--tatctacaaaaaagttgcgattttgaccccttttttggaaca 128466  T
Q  294 cgt 296  Q
    |||    
T  128465 cgt 128463  T

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Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 4701 - 4637
Alignment:
Q  222 tttagggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgaccccttttt 286  Q
    |||||| ||||||| ||||||| |||||||| ||||||||||| |||||||| || |||||||||    
T  4701 tttaggaaaatatgctcttttgaccccttatctttacaaaaaagttgcgattttggccccttttt 4637  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 49782 - 49851
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  49782 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 49851  T

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Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 62321 - 62390
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||||| ||||| |||||||| |||||||||| || ||||||||||||||||||  |||||||||    
T  62321 agggaaatatgtt-ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttctgggacacgt 62390  T

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Target: scaffold0607 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 2217 - 2161
Alignment:
Q  239 ttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||    
T  2217 ttttgaccccttatctttacaaaaagtt-gcgattatgaccccttttttgggacacgt 2161  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 19405 - 19474
Alignment:
Q  225 agggaaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggacacgt 296  Q
    ||||||||||| | ||||| |||||||| |||||||||| || ||||||||| ||||||||| |||||||||    
T  19405 agggaaatatgct-ttttgaccccttatctttacaaaaagtt-gcgattatggccccttttttgggacacgt 19474  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 934 - 871
Alignment:
Q  229 aaatatgttcttttggccccttatatttacaaaaaatttgcgattatgacccctttttcgggaca 293  Q
    ||||||| ||||||| |||||||| |||||||||| || || ||||||||||||| || ||||||    
T  934 aaatatgctcttttgaccccttatctttacaaaaagtt-gcaattatgaccccttatttgggaca 871  T

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