View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17837_high_42 (Length: 316)
Name: NF17837_high_42
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_42 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 37850718 - 37850404
Alignment:
| Q |
8 |
ccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttccttccttctcctcgtttattagaaatccttt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37850718 |
ccaataatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggtcaggcagcttccttcctcctcctcgtttattagaaatccttt |
37850619 |
T |
|
| Q |
108 |
tgttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactat |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37850618 |
tattaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagtggtacagatatacatatcgaggatccaagtactat |
37850519 |
T |
|
| Q |
208 |
cgtcacaattttaagttcact------tatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggaga |
301 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37850518 |
cgtcacaattttaagttcactgatccctatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggaga |
37850419 |
T |
|
| Q |
302 |
ggattacccatgaat |
316 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37850418 |
ggattacccatgaat |
37850404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 28089731 - 28089623
Alignment:
| Q |
110 |
ttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcg |
209 |
Q |
| |
|
||||||| | ||| |||||||||||||| ||||| |||||||||| |||||||||| | |||| | |||| || |||| |||||||||||| ||||| |
|
|
| T |
28089731 |
ttaagataaaaggcccttttcaattcatttctatggagatacatttgaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatca |
28089632 |
T |
|
| Q |
210 |
tcacaattt |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
28089631 |
tcacaattt |
28089623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 37837241 - 37837135
Alignment:
| Q |
112 |
aagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcgtc |
211 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||| | || | | |||| || |||| |||||||||||||||||| | |
|
|
| T |
37837241 |
aagataagaggcccctttcaattcatttctatggagatacattcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcatt |
37837142 |
T |
|
| Q |
212 |
acaattt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
37837141 |
acaattt |
37837135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 37837379 - 37837325
Alignment:
| Q |
7 |
tccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatga |
61 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||| ||| ||| |||| |
|
|
| T |
37837379 |
tccaataatatactgatcatttaggttctctgtagcctccaaaactagctcatga |
37837325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 36866080 - 36866009
Alignment:
| Q |
8 |
ccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttcctt |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| ||||||||||| | ||||||| ||| |||||||||| |
|
|
| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaacacttgatcatgaaggtcaggcagcttcctt |
36866009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University