View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_44 (Length: 304)
Name: NF17837_high_44
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 41297033 - 41296735
Alignment:
| Q |
1 |
ttaaatgtaaccctgaaaattaagcatcaaaattaaggattcaacacttcattttggtagataatga-------------attgattatgatatgttact |
87 |
Q |
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| T |
41297033 |
ttaaatgtaaccctgaaaattaagcatcaaaattaaggattcaacacttcattttggtagataatgagtggtactaatgaattgattatgatatgttact |
41296934 |
T |
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| Q |
88 |
cacattggcgcagcataaagtgagactgaggcagcattgcctgtaagaacacaaaggaaataataattaatcctaattaaggaggagcttaaactagcta |
187 |
Q |
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| T |
41296933 |
cacattggcgcagcataaagtgagactgaggcagcattgcctgtaagaacacaaaggaaataataattaatcctaattaaggaggagcttaaactagcta |
41296834 |
T |
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| Q |
188 |
aagaacgaagtgattggattcaagtggttaatatgttaatcatttttgtgagactagttaagacnnnnnnntgaaattaagaaatgaacgaacgaagaaa |
287 |
Q |
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| T |
41296833 |
aagaacgaagtgattggattcaagtggttaatatgttaatcatttttctgagactagttaagac--aaaaatgaaattaagaaatgaacgaacgaagaaa |
41296736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 41306832 - 41306748
Alignment:
| Q |
55 |
tggtagataatgaattgattatgatatgttactcacattggcgcagcataaagtgagactgaggcagcattgcctgtaagaacac |
139 |
Q |
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| T |
41306832 |
tggtagatgatgaattaattatgttatgtaacttacattggcgccgcataaagtgagactgaagcagcattgcctgcaagaacac |
41306748 |
T |
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