View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_45 (Length: 298)
Name: NF17837_high_45
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 24898633 - 24898913
Alignment:
| Q |
1 |
taaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagtccaaataattttt |
100 |
Q |
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| T |
24898633 |
taaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaaaagcatttcaacgtccaaacaattttt |
24898732 |
T |
|
| Q |
101 |
ctgcttcttcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaggatccagttactgtct |
200 |
Q |
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| T |
24898733 |
cagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaatgatccagttactgtct |
24898832 |
T |
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| Q |
201 |
caacaggcataacctacgacagagaaagcatcgaaaaatggctcttttcatcggaaaacaaaacatgtcctgtcacaaaac |
281 |
Q |
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| T |
24898833 |
caacaggcataacctacgacagagaaagcatcgaaaaatggctcttttcatcggaaaacaaaacatgtcctgtcacaaaac |
24898913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 24891326 - 24891054
Alignment:
| Q |
9 |
aacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagtccaaataatttttctgcttct |
108 |
Q |
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| T |
24891326 |
aacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaataacatttcaaagtccaaacaatttttcagctact |
24891227 |
T |
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| Q |
109 |
tcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggc |
208 |
Q |
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| T |
24891226 |
tgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaagatccagttactgtctcaacaggc |
24891127 |
T |
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| Q |
209 |
ataacctacgacagagaaagcatcgaaaaatggctcttttcatcggaaaacaaaacatgtcctgtcacaaaac |
281 |
Q |
| |
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| T |
24891126 |
ataacctacgacagagaaagcatcgaaaaatggctcttttcatcggaaaacaaaacatgtcctgtcacaaaac |
24891054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 24906139 - 24906372
Alignment:
| Q |
48 |
tttctcaactctccaccaaaaagctaaaacatttcaaagtccaaataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacacc |
147 |
Q |
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| T |
24906139 |
tttctcaactctccaccaaaaagcaataacatttcaaagtccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacacc |
24906238 |
T |
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| Q |
148 |
attttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggcataacctacgacagagaaagcatcgaaaaatggctcttt |
247 |
Q |
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| T |
24906239 |
attttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggcataacctacgacagagaaagcatcgaaaaatggctcttt |
24906338 |
T |
|
| Q |
248 |
tcatcggaaaacaaaacatgtcctgtcacaaaac |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
24906339 |
tcatcggaaaacaaaacatgtcctgtcacaaaac |
24906372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 43262515 - 43262619
Alignment:
| Q |
177 |
tcatgaaggatccagttactgtctcaacaggcataacctacgacagagaaagcatcgaaaaatggctcttttcatcggaaaacaaaacatgtcctgtcac |
276 |
Q |
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||||||||||||| || || ||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| | |||||| ||||||||||| || |
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| T |
43262515 |
tcatgaaggatccggtaacagtctcaacaggtataacctacgatagagaaagtattgaaaaatggctattttcgaagaaaaacatgacatgtcctgttac |
43262614 |
T |
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| Q |
277 |
aaaac |
281 |
Q |
| |
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||||| |
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| T |
43262615 |
aaaac |
43262619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 36744684 - 36744554
Alignment:
| Q |
151 |
ttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggcataacctacgacagagaaagcatcgaaaaatggctcttttca |
250 |
Q |
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|||||| ||||| ||||| |||||||| ||||| ||||| || || | || ||||| || || ||||||||||||| ||| ||||||||| | |||||| |
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| T |
36744684 |
ttttctttgcccaatttccctacaacttatgaaagatcctgtcacactttccacaggaattacgtacgacagagaaaacatagaaaaatggttattttca |
36744585 |
T |
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| Q |
251 |
tcggaaaacaaaacatgtcctgtcacaaaac |
281 |
Q |
| |
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| T |
36744584 |
ttccaaaacaatacttgtcctgttacaaaac |
36744554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 33089075 - 33089116
Alignment:
| Q |
200 |
tcaacaggcataacctacgacagagaaagcatcgaaaaatgg |
241 |
Q |
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| T |
33089075 |
tcaaccggcataacctacgacagagacagcatcgaaaaatgg |
33089116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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