View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_46 (Length: 291)
Name: NF17837_high_46
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 37850170 - 37850435
Alignment:
| Q |
20 |
gttctatggattgaatcttagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850170 |
gttctatggattgaatcttagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatcc |
37850269 |
T |
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| Q |
120 |
ttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850270 |
ttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaag |
37850369 |
T |
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| Q |
220 |
gtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctatattcttcga |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
37850370 |
gtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctatgttgttcga |
37850435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 37836797 - 37837047
Alignment:
| Q |
20 |
gttctatggattgaatcttagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatcc |
119 |
Q |
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| T |
37836797 |
gttctatggactgaatctgagtggtaatggattgacaggtggcattccttcggaaattggtttactcggactgc------tgcaaagtctagatatatcc |
37836890 |
T |
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| Q |
120 |
ttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaag |
219 |
Q |
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|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |
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| T |
37836891 |
ttaaacaatttaacaggaagcatagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatctcttcaatggatctgtaccaacag |
37836990 |
T |
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| Q |
220 |
gtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctat |
276 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37836991 |
gtctaatgaggttattgaattcctcaccatcatcattcatgggtaatcctttcctat |
37837047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 37842490 - 37842662
Alignment:
| Q |
100 |
tgcaaagtctagatatatccttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctctt |
199 |
Q |
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|||||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37842490 |
tgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctctt |
37842589 |
T |
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| Q |
200 |
ccatggttctgtaccaaaaggtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctc |
272 |
Q |
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| T |
37842590 |
caatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctctc |
37842662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 37831093 - 37831343
Alignment:
| Q |
20 |
gttctatggattgaatcttagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatcc |
119 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| | ||| ||||||||||| ||||| | ||||||||| |||||||||| ||||||||| |
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| T |
37831093 |
gttctatggattgaatctgagttctaatggattaacaggcagcattccttcagaaattgggaagctaggactgc------tgcaaagtctggatatatcc |
37831186 |
T |
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| Q |
120 |
ttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaag |
219 |
Q |
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|||||||||||||||||||||||| |||| |||| |||||||||| |||| ||| ||||| |||||| |||||||||| ||||||||||||||| || |
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| T |
37831187 |
ttgaacaatttaacaggaagcatatatgctcttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacag |
37831286 |
T |
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| Q |
220 |
gtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctat |
276 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37831287 |
gtctaatgaagttactgaattcctcaccatcatcattcatgggtagtcctctcctat |
37831343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 272
Target Start/End: Original strand, 28089388 - 28089532
Alignment:
| Q |
128 |
tttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatg |
227 |
Q |
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|||| |||||| ||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| || ||||||| |
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| T |
28089388 |
tttagcaggaatcatcgatgctcttggagatcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatg |
28089487 |
T |
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| Q |
228 |
aatttattgaattcctcaccatcatcattcatgggtaatcctctc |
272 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28089488 |
agtttattgaattcctcaccatcatcattcatgggcaatcctctc |
28089532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 37842416 - 37842464
Alignment:
| Q |
20 |
gttctatggattgaatcttagtgctaatggattgaaaggtgacattcct |
68 |
Q |
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||||||||| |||||| | |||||||||||||||| ||||| ||||||| |
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| T |
37842416 |
gttctatgggttgaatttgagtgctaatggattgataggtggcattcct |
37842464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 36865548 - 36865794
Alignment:
| Q |
24 |
tatggattgaatcttagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttga |
123 |
Q |
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|
|||||||||||||| |||| ||||||||||| ||||| |||||||||| ||||| | ||||||||| ||||||| | ||||||||||||| |
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| T |
36865548 |
tatggattgaatctgagtgataatggattgacaggtggtattccttcagaaattgggatgctaggactgc------tgcaaagcttggatatatccttga |
36865641 |
T |
|
| Q |
124 |
acaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtct |
223 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||| | |||| |
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| T |
36865642 |
acaatttgacaggaagcatagatgctcttgaaggtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtct |
36865741 |
T |
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| Q |
224 |
aatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctat |
276 |
Q |
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||| | ||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
36865742 |
aattaggttattgaattcctcaccgtcatcgttcatgggtaatcctctcctat |
36865794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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