View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_47 (Length: 278)
Name: NF17837_high_47
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 6541934 - 6541752
Alignment:
| Q |
81 |
tgctataatgatgtactcac--tcggattttaattataatccactataaactaaaatacttgacttttataattcatacccctnnnnnnnncttttatat |
178 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6541934 |
tgctataatgatgtactccccctcggattttaattataatccactataaactaaaatacttgacttttataattcataccccaaaaaaaaacttttatat |
6541835 |
T |
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| Q |
179 |
aattcatatttttgtcacaaatggagtttccttatctcgaaatttttctcgaacgaaattaaatccagagtttaggattgagat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
6541834 |
aattcatatttttgtcacaaatggagtttccttatctcaaaatttttctcgaaggaaattaaa-ccaaagtttaggattgagat |
6541752 |
T |
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