View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_5 (Length: 556)
Name: NF17837_high_5
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 18209149 - 18209669
Alignment:
| Q |
16 |
ataggaattatatcgttaagaaggcatctgacgatgttggtgtcatcgaacaattcatatctaagtataatttggaggtagttcatatctgatattacaa |
115 |
Q |
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| T |
18209149 |
ataggaattatgccgttaagaaggcatctgacgatgttggtgtcatcgaacagttcatgtctaagtataatttggaggtagttcatatctgatattacaa |
18209248 |
T |
|
| Q |
116 |
tctcaaaactattttagaataattaatgtacataacgaaatcattctatgactaattggatcttttgttgatgtatgtgtgatagaaacccaacgatgga |
215 |
Q |
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||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18209249 |
tctcataactattttagattaattaatgttcataaggaaatcatcctatgactaattggttcttttgttgatgtatgtgtgatagaaacccaacgatgga |
18209348 |
T |
|
| Q |
216 |
tctgttgaagagcttagtctgaatggtgttgcaacaaacaattataatgttgaggtggcacttcattgattaattatatataaatcaagaattgctaata |
315 |
Q |
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||||||||||| |||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||| ||| |
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| T |
18209349 |
tctgttgaagaacttagtgtgaatggtgttgcagccaacaattataatgttcaggtggcacttcattgattaattatatat-aatctacaattgccaatc |
18209447 |
T |
|
| Q |
316 |
aaatgtagaaaatttaatctgtatgaaatttaaacaattttgttttacacaaatgtctgcaggatttacatgaggctcaagactcttgcagcaatacctg |
415 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||| |||| |||||| ||||||| |||||||||||||| |
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| T |
18209448 |
aaatgcagaaaatttaatctgtaggaaatttaaacaaatttttttaacacaaatgtctgcaggatgtacaagaggctgaagactcatgcagcaatacctg |
18209547 |
T |
|
| Q |
416 |
tgtgattggcacaccaaccagcaagacaagtcttaagcggtcctctgatagcattgactctgtggctgttgaacatggtgaagctggtcaggcatcggtt |
515 |
Q |
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| T |
18209548 |
tgtgattggcacaccaaccagcaagacaggtcttaagcggtcctctgatagcattgactctgtggctgttgatcacggtgaagctggtcaggcatcggtt |
18209647 |
T |
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| Q |
516 |
acaaaacctaacagggctgttc |
537 |
Q |
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| T |
18209648 |
acaaaacctaacagggatgttc |
18209669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 37899632 - 37899112
Alignment:
| Q |
16 |
ataggaattatatcgttaagaaggcatctgacgatgttggtgtcatcgaacaattcatatctaagtataatttggaggtagttcatatctgatattacaa |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37899632 |
ataggaattatgccgttaagaaggcatctgacgatgttggtgtcatcgaacagttcatgtctaagtataatttggaggtagttcatatctgatattacaa |
37899533 |
T |
|
| Q |
116 |
tctcaaaactattttagaataattaatgtacataacgaaatcattctatgactaattggatcttttgttgatgtatgtgtgatagaaacccaacgatgga |
215 |
Q |
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||||| |||| ||||||| |||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37899532 |
tctcataactgttttagattaattaatgttcataaggaaatcatcctatgactaattggttcttttgttgatgtatgtgtgatagaaacccaacgatgga |
37899433 |
T |
|
| Q |
216 |
tctgttgaagagcttagtctgaatggtgttgcaacaaacaattataatgttgaggtggcacttcattgattaattatatataaatcaagaattgctaata |
315 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||| |||| | |||||| ||| |
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| T |
37899432 |
tctgttgaagagcttagtgtgaatggtgttgcagcaaacaattataatgttcaggtggcacttcattgattatttatgtat-aatctacaattgccaatc |
37899334 |
T |
|
| Q |
316 |
aaatgtagaaaatttaatctgtatgaaatttaaacaattttgttttacacaaatgtctgcaggatttacatgaggctcaagactcttgcagcaatacctg |
415 |
Q |
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||||| ||||||||||||||||| ||||||||||| | ||| ||| ||||||||||||||||||| |||| |||| | ||||||| |||||||||||||| |
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| T |
37899333 |
aaatgcagaaaatttaatctgtaggaaatttaaaccaatttttttaacacaaatgtctgcaggatgtacaagaggttgaagactcatgcagcaatacctg |
37899234 |
T |
|
| Q |
416 |
tgtgattggcacaccaaccagcaagacaagtcttaagcggtcctctgatagcattgactctgtggctgttgaacatggtgaagctggtcaggcatcggtt |
515 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
37899233 |
tgtgattggcacaccaaccagcaagacaggtcttaagcggtcctctgatagcattgactctgtggctgttgatcacggtgaagctggtcaggcatcggtt |
37899134 |
T |
|
| Q |
516 |
acaaaacctaacagggctgttc |
537 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37899133 |
acaaaacctaacagggctgttc |
37899112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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