View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_high_7 (Length: 535)
Name: NF17837_high_7
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 48568691 - 48568909
Alignment:
| Q |
20 |
ttaaggatgtcttcttagaaatgctatacatgtgtcagttctaacttggaaatacacttatgcaagagcaggcggaaggccattcctcatcttgtctcct |
119 |
Q |
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| T |
48568691 |
ttaaggatgtattcttagaaatgctatacatgtgtcagttttaacttggaaatacacttatgcaagagcaggcggaaggccattcctcatcttgtctcct |
48568790 |
T |
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| Q |
120 |
agataatagtcaacgctaatattatttcagtcaattttgctagacaaattaattaggccatttccttaatccctgttagttttttaaagaactgaacttg |
219 |
Q |
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| T |
48568791 |
agataatagtcaacgctaatattatttcagtcaattttgctagacaaattaattaggccatttccttaatccctgttagttttttaaagaactgaacttg |
48568890 |
T |
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| Q |
220 |
tcttgacataattgctgcg |
238 |
Q |
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| T |
48568891 |
tcttgacataattgctgcg |
48568909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 241 - 393
Target Start/End: Original strand, 48568936 - 48569090
Alignment:
| Q |
241 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
338 |
Q |
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| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
48569035 |
T |
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| Q |
339 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
393 |
Q |
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| T |
48569036 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
| Q |
452 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
512 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
48569201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 10822347 - 10822202
Alignment:
| Q |
243 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcca |
340 |
Q |
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| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcca |
10822248 |
T |
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| Q |
341 |
gagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
386 |
Q |
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| T |
10822247 |
gaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 36145048 - 36145194
Alignment:
| Q |
242 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcc |
339 |
Q |
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||||||||||||| ||||| |||| || |||||||| ||||||||||||| ||| ||| | ||||||||||| || || || ||||||||||||||||| |
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| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcc |
36145147 |
T |
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| Q |
340 |
agagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
386 |
Q |
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||| ||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
36145148 |
agaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 10821937 - 10821878
Alignment:
| Q |
458 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctatttt |
517 |
Q |
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||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||| |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatatttt |
10821878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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