View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_1 (Length: 697)
Name: NF17837_low_1
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 10596848 - 10597235
Alignment:
| Q |
2 |
aagacaaatgataagaataaagagaaaggcacggaaaataagacgcgagactcttcagagcattctgtaaaggatagaaatacaacaaccaatgaagctg |
101 |
Q |
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| T |
10596848 |
aagacaaatgataagaaggaagagaaaggggcggaaaatattacaggggagtcttcagaacactctacagaagatagaaacacaacaactaatgaaggtg |
10596947 |
T |
|
| Q |
102 |
gtaaaagtggaagacgagttctgtcggatgcagatgctgctgttttgatacaagctgtttatcgcggttatctagtaagaaaatgggagcctttgaagaa |
201 |
Q |
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| T |
10596948 |
gtaaaagtggaagacgagttctgtcggatgcagatgctgctgttttgatacaagctgtttatcgcggttatctagtaagaaaatgggagcctttaaagaa |
10597047 |
T |
|
| Q |
202 |
attaaggcagataggtgaagtcagtaaggaggtgaccgatgttagggaacgtgttcaagcttttgaaggtcattctgattttcaaaatgataacaagcaa |
301 |
Q |
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| T |
10597048 |
attgaggcagataggtgaagtcagtaaggaggtgaccgatgttagggcacatgttcaagcttttgaaggtcattctgattttcaaaatgataacaagcaa |
10597147 |
T |
|
| Q |
302 |
aaaattgctattggagaaactataatgagactgttgctgaagttagatactttacaggtatgtgttagctaacaaattttactccaga |
389 |
Q |
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| T |
10597148 |
aaaattgcaattggtgaaactataatgagactgttgctgaagttagatactatacaggtatgtgggagcgaacaagctttactccaga |
10597235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 463 - 679
Target Start/End: Original strand, 10597308 - 10597524
Alignment:
| Q |
463 |
ttatactaaatgctactgaacatgtattttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttacaggaaa |
562 |
Q |
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| T |
10597308 |
ttatactaaatgctactcgacatgtattttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttgcaggaaa |
10597407 |
T |
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| Q |
563 |
agcttgactctatatcggttaagattcctcagcagcagccccatgaagatgctaaagaacctgttgaagtctctccattgaatgttcataatggagaaca |
662 |
Q |
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||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||| |||| | ||| |
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| T |
10597408 |
agcttgattctataacggttaagaatccttgccagcagccccatgaagatgctaaagatcctgttgaagtcacttcattgaatgttcagaatgaaaaact |
10597507 |
T |
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| Q |
663 |
taatcaagagcagcaag |
679 |
Q |
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|||||||||||| |||| |
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| T |
10597508 |
taatcaagagcaacaag |
10597524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 491 - 576
Target Start/End: Original strand, 53388104 - 53388189
Alignment:
| Q |
491 |
ttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttacaggaaaagcttgactctata |
576 |
Q |
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| T |
53388104 |
ttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttgcaggaaaagcttgactctata |
53388189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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