View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17837_low_11 (Length: 517)
Name: NF17837_low_11
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 53045052 - 53045538
Alignment:
| Q |
16 |
atttctcctactagtgataggtatataaccttatttaaggattgaaaaagatattctgagtagcgtccttttggcttggtattccaattaagtttctcac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53045052 |
atttctcctactagtgataggtatataacctcatttaaggattgaaaaagctattctgagtagcgtccttttggcttggtattccaattaattttctcac |
53045151 |
T |
|
| Q |
116 |
attctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttatccttacttggatggattgattgtgatttta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53045152 |
attctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttatccttacttggatgaattgattgtgatttta |
53045251 |
T |
|
| Q |
216 |
ataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataactcctcaggtttggcgtgtgaatggtcaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53045252 |
ataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataacttctcaggtttggcgtgtgaatggtcaag |
53045351 |
T |
|
| Q |
316 |
nnnnnnntcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53045352 |
aaaaaaatcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatct |
53045451 |
T |
|
| Q |
416 |
tataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtannnnnnnctagttctttctgaatgtgtgtgtctgtg |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
53045452 |
tataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtatttttttccagttctttctgaatgtgtgtgtctgtg |
53045538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 460
Target Start/End: Complemental strand, 15962626 - 15962489
Alignment:
| Q |
323 |
tcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatcttatagga |
422 |
Q |
| |
|
||||||| |||| |||| || |||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| ||| || ||| || ||| |
|
|
| T |
15962626 |
tcttctcccagcttctgatcaatcaaaattttatagtggagattgcttcatctttcaatattcgtatcctggagaagataaggacgactgtctcattgga |
15962527 |
T |
|
| Q |
423 |
acatggattggaaagaacagtgttgaggtgaaagattt |
460 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15962526 |
acgtggataggaaagaacagtgttgaggtgaaagattt |
15962489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University