View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_12 (Length: 515)
Name: NF17837_low_12
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 56 - 492
Target Start/End: Complemental strand, 6489636 - 6489203
Alignment:
| Q |
56 |
atgtatcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnnnatacatcacttagcttttaagaattcactaatattct |
155 |
Q |
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| T |
6489636 |
atgtatcggcagcctttatgaatgaattcaccttttatatatttgactagcctatttttttttatacatcactt-gctttcaagaattcaataatattct |
6489538 |
T |
|
| Q |
156 |
ttgaaaatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacaca |
255 |
Q |
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| T |
6489537 |
ttgaaaatccacgttgtccatcaccacaatcggttatgctctccctaacaaaactcacaa---gtacgatgtcttctttcactcagacatcattcacaca |
6489441 |
T |
|
| Q |
256 |
atgatcacaaataaacctttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtc |
355 |
Q |
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| T |
6489440 |
atgatcacaaatagacctttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtc |
6489341 |
T |
|
| Q |
356 |
tcttcatcaaccgcagcagtgtgtcc-ccccagctgctgtccgttcaactctacataggcggagaatgccttgttttccaaatcctacacgcctcgttcg |
454 |
Q |
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| T |
6489340 |
tcttcatcaaccgcatcggtgtgtcccccccagctgatgtccgttcaactctacatagccgaagaatgccttgttttccaaatcctacatgcctcgttcg |
6489241 |
T |
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| Q |
455 |
tcctgaaatcacttgttgcgtttctgggcaacgaaaat |
492 |
Q |
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| T |
6489240 |
tcccgaaatcgcttgttgcgtttctgggcaacgaaaat |
6489203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 60 - 405
Target Start/End: Original strand, 6479921 - 6480265
Alignment:
| Q |
60 |
atcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnnnatacatcacttagcttttaagaattcactaatattctttga |
159 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
6479921 |
atcggcagcctttatgaatgaattcatcttctatatatttaactaccctattttttt--atacatcacttagctttcaagaattcaataatattctttga |
6480018 |
T |
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| Q |
160 |
aaatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatga |
259 |
Q |
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| T |
6480019 |
aaatccacaatgtccatcaccacaatcgattacgctctccctaacaaaaaccacaacaagtacgatgtcttcttccactcagacatcattcacacaatga |
6480118 |
T |
|
| Q |
260 |
tcacaaataaacctttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctctt |
359 |
Q |
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| T |
6480119 |
tcacaaataaacctttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctctt |
6480218 |
T |
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| Q |
360 |
catcaaccgcagcagtgtgtccccc-cagctgctgtccgttcaactc |
405 |
Q |
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| T |
6480219 |
catcaaccgcagtggtgtgtcccccgcagttgctgtccgttcaactc |
6480265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 6489699 - 6489658
Alignment:
| Q |
14 |
agggttagtggaaaggttatatatttggtcatggttctgttt |
55 |
Q |
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| T |
6489699 |
agggttagtggaaaggttatatatttggtcatggttctcttt |
6489658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 119 - 492
Target Start/End: Original strand, 51946714 - 51947087
Alignment:
| Q |
119 |
atacatcacttagcttttaagaattcactaatattctttgaaaatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaa |
218 |
Q |
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||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||||||||| |
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| T |
51946714 |
atacatcacttagctctcaagaattcaataatattcattgaaaatccacgatgtccatcaccacaatcgattacgctgtccctaataaaactcacaacaa |
51946813 |
T |
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| Q |
219 |
gtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatggtggacaaatggctctcaagcatcaaaccctacgaaaac |
318 |
Q |
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| T |
51946814 |
gcacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatggtggacaaatggctctcaagcatcaaaccatacgaaaac |
51946913 |
T |
|
| Q |
319 |
aacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagcagtgtgtc-cccccagctgctgtccgttcaactctacataggcgga |
417 |
Q |
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| T |
51946914 |
aacaatagcttccttgtcggcttagatgttgagtgtctcttcatcaaccactctggtgtgtctcccccagctgctgtcc-ttcaactatacataggcgga |
51947012 |
T |
|
| Q |
418 |
gaatgccttgttttccaaatcctacacgcctcgttcgtcctgaaatcacttgttgcgtttctgggcaacgaaaat |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
51947013 |
gaatgccttgttttccaaatcctacacgcctcgttcgtcccgaaatcgcttgttgcgtttctgggcaacgaaaat |
51947087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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