View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_15 (Length: 464)
Name: NF17837_low_15
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Complemental strand, 36294213 - 36293775
Alignment:
| Q |
17 |
gaaacctatagttcacaaaaccttgttggtcaaaacagaatccattgtatttacagctagtattggaaacactgtttatacattccccaacttttaagaa |
116 |
Q |
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| T |
36294213 |
gaaacctatagttcacaaaaccttgttggtcaaaacagaatccattgtatttacagctagtattggaaacactgtttatacattccccaacttttaagaa |
36294114 |
T |
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| Q |
117 |
tgaaagattcagaattaatatcctcatgtcactattgaactcaactattcatataatatatgtgcgtgacctggtgagacaaagcttttcaagatttgga |
216 |
Q |
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| T |
36294113 |
tgaaagattcagaattaatatcctcatgtcactattgaactcaactattcatataatatatgtgcgtgacctggtgagacaaagcttttcaagatttgga |
36294014 |
T |
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| Q |
217 |
tacgattgcgaaaaacaactttcaagtgtcaaatagtatgagaaagcgataatagtgaagagctacatttaggcttgatttaattacttagattatgcgc |
316 |
Q |
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| T |
36294013 |
tacgattgcgaaaaacaactttcaagtgtcaaatagtatgagaaagcgataatagtgaagagctacatttaggcttgatttaattacttagattatgcgc |
36293914 |
T |
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| Q |
317 |
aaccaagtatcagttcaaaagttcagcaagcatattgttcttacttaggatagaaattaatgataagtttatggatcaaaattaatgataattgaatacc |
416 |
Q |
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| T |
36293913 |
aaacaagtatcagttcaaaagttcagcaagcatattgttcttacttaggatagaaattaatgataagtttatggattaaaattaatgataattgaatacc |
36293814 |
T |
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| Q |
417 |
agtgtattagtgttgcaagctacctgaataacttcatct |
455 |
Q |
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| T |
36293813 |
agtgtattagtgttgcaagctacctgaataacttcatct |
36293775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 36288627 - 36288552
Alignment:
| Q |
17 |
gaaacctatagttcacaaaaccttgttggtcaaaacagaatccattgtatttacagctagtattggaaacactgtt |
92 |
Q |
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| T |
36288627 |
gaaacctgtaattcacagaaccttgttggtcaaaacagaatcccttatatttgcagctagtattggaaacattgtt |
36288552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 36288388 - 36288335
Alignment:
| Q |
402 |
tgataattgaataccagtgtattagtgttgcaagctacctgaataacttcatct |
455 |
Q |
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| T |
36288388 |
tgataattgaatactaatgtattagtgttgcgagctacctgaataacttcatct |
36288335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 36283311 - 36283241
Alignment:
| Q |
17 |
gaaacctatagttcacaaaaccttgttggtcaaaacagaatccattgtatttacagctagtattggaaacact |
89 |
Q |
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||||||| || |||||| |||||||||||||||||| ||||| ||||||| |||| ||||||||||||||| |
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| T |
36283311 |
gaaacctgtaattcacagaaccttgttggtcaaaac--aatcccttgtattagcagccagtattggaaacact |
36283241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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