View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_low_17 (Length: 435)

Name: NF17837_low_17
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_low_17
NF17837_low_17
[»] chr4 (3 HSPs)
chr4 (1-419)||(24977738-24978158)
chr4 (237-331)||(16595097-16595198)
chr4 (278-322)||(3958957-3959001)
[»] chr8 (3 HSPs)
chr8 (48-182)||(4922567-4922699)
chr8 (237-380)||(4922739-4922889)
chr8 (278-374)||(6596530-6596627)
[»] chr6 (3 HSPs)
chr6 (27-184)||(10502113-10502268)
chr6 (237-331)||(10501974-10502075)
chr6 (278-330)||(6982848-6982900)
[»] chr1 (6 HSPs)
chr1 (11-182)||(16140520-16140686)
chr1 (11-184)||(9057683-9057851)
chr1 (237-366)||(9057889-9058025)
chr1 (237-381)||(16140329-16140480)
chr1 (278-348)||(42080677-42080747)
chr1 (254-376)||(40632829-40632958)
[»] chr2 (4 HSPs)
chr2 (27-185)||(32230121-32230277)
chr2 (32-185)||(30426270-30426421)
chr2 (237-331)||(30426132-30426233)
chr2 (285-376)||(41411479-41411571)
[»] chr7 (3 HSPs)
chr7 (278-355)||(25862590-25862665)
chr7 (237-303)||(32025240-32025313)
chr7 (237-331)||(32033759-32033860)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 24978158 - 24977738
Alignment:
Q  1 ctaatagttgtaagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatgg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24978158 ctaatagttgtaagcattgctcagaggcaggcaagaaaattgtccatattcttagtaaattttggggagatgtggtggactttgaccacacaacagatgg 24978059  T
Q  101 cactttggatcctgacactataacagtgaaaagatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatgctaagtctagcaggaagt 200  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24978058 cactttggatcctgacactattagagtgaaaagatgaatatgcaccctgtggttttgaagtacttggaggcacaatcagatgctaagtctagcaggaagt 24977959  T
Q  201 caagaaagaataaaagtaatactaagaacctggctggtagcagctcagcaagaggcaaaggctctgatggcatcaca---agcacatccaaactcgtttc 297  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| |    
T  24977958 caagaaagaataaaagcagtactaagaagctggctggtagcagctctgcaagaggcaaaggctctgatggcatcacaagtagcacatccaaactcgttcc 24977859  T
Q  298 aaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatgagatgtttcttaatatgtgctaggagctagttgtttgttagcttagtttagca 397  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  24977858 aaaaagagtgtaatcaaaagcaat-tcaaatatggttgactgtcatgagatgtttcttaatatgtgttagaagctaattgtttgtcagcttagtttagca 24977760  T
Q  398 gttgatttgcttgttagcatat 419  Q
    ||||||||||||||||||||||    
T  24977759 gttgatttgcttgttagcatat 24977738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 16595198 - 16595097
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcacaagca-------catccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| |||||| ||||| ||||||||||||||||||| |       |||||||||||||||||||||| |||| || ||||||||||  |||||    
T  16595198 gtagcagctctgcaagaagcaaatgctctgatggcatcacaagtagtgagtacatccaaactcgtttcaaaaagggtgttataaaaagcaatcccaaata 16595099  T
Q  330 tg 331  Q
    ||    
T  16595098 tg 16595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 3959001 - 3958957
Alignment:
Q  278 agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatc 322  Q
    ||||||| ||||||||||  |||||| ||||||||||||||||||    
T  3959001 agcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 4922567 - 4922699
Alignment:
Q  48 attcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccc 147  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| |||||| ||||||  | || ||||||||||||||||||||||    
T  4922567 attcttagtaaattttggggcgatgtggaggactctgaccacacaatagatgacactatggatcatgacac--tgacggtgaaaagatgaatatgcaccc 4922664  T
Q  148 tatggttttgaagtacttggaggcacaatcagatg 182  Q
    | ||| |||||||||||||||||||||| ||||||    
T  4922665 tgtggctttgaagtacttggaggcacaaccagatg 4922699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 380
Target Start/End: Original strand, 4922739 - 4922889
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcacaag-------cacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| |||| ||||||||||||||||||||||| |||       ||||| |||||||||| ||||||| || |||| ||||||| ||  |||||    
T  4922739 gtagcagctctgcaataggcaaaggctctgatggcatcataagtagtgagcacattcaaactcgttccaaaaagggtctcataaaaagcattcccaaata 4922838  T
Q  330 tggttgactgtcatgagatgtttcttaatatgtgctaggagctagttgttt 380  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  4922839 tgtttgactgtcaggagatgtttcttaatatgtgctaggagctagttgttt 4922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 6596530 - 6596627
Alignment:
Q  278 agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatg-agatgtttcttaatatgtgctaggagctag 374  Q
    ||||||||||||||| ||  |||||| |||| ||||||||||||| |||||||   ||| ||| ||| ||||| ||||||||| ||||| | ||||||    
T  6596530 agcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtgattgttatgtagatggttcttaataagtgctggtagctag 6596627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 10502268 - 10502113
Alignment:
Q  27 gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag 126  Q
    |||| |||||||| |||| | |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |||| |||| ||||||||  | ||||    
T  10502268 gcagccaagaaaagtgtcaaaattcttagcaaattttcgggggatgtggtggactctaaccacacaacagatgacactgtggaccctgacac--tgacag 10502171  T
Q  127 tgaaaagatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatgct 184  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||||  |||||||    
T  10502170 tgaaaagatgaatatgcaccctgtggctttgaagttcttggaggcacaactagatgct 10502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 10502075 - 10501974
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcac-------aagcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| ||||||||||||| |||||||||||||||       ||||||||||||||||||| ||||||| |||| || ||||||||||  |||||    
T  10502075 gtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaata 10501976  T
Q  330 tg 331  Q
    ||    
T  10501975 tg 10501974  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 6982848 - 6982900
Alignment:
Q  278 agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatat 330  Q
    ||||||| ||||||||||  |||||| |||| |||||||||||||||||||||    
T  6982848 agcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatat 6982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 16140686 - 16140520
Alignment:
Q  11 taagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggat 110  Q
    |||||||||||||||||||  |||||||| |||||| |||||||||||||||||||| ||||||||||||||||   |||| ||| ||| |||| |||||    
T  16140686 taagcattgctcagaggcaagcaagaaaagtgtccaaattcttagtaaattttggggtgatgtggtggactctg---acactacaaatgccactatggat 16140590  T
Q  111 cctgacactataacagtgaaaagatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatg 182  Q
    ||||||||    |||  ||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||    
T  16140589 cctgacac--cgacaaagaaaagatgaatatgcaccctatggctttgcagtatttggaggcacaaccagatg 16140520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 9057683 - 9057851
Alignment:
Q  11 taagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggat 110  Q
    ||||||||| |||||||||  |||||||| |||||| ||||||| ||||| ||| ||  |||||||||||||||||   ||||||||||||| | |||||    
T  9057683 taagcattgttcagaggcatgcaagaaaagtgtccaaattcttaataaatgttgaggttatgtggtggactctgac---acaacagatggcattatggat 9057779  T
Q  111 cctgacactataacagtgaaaagatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatgct 184  Q
    |||||||||   ||| |||||||||||||||||||||| ||| ||||||||| |||||||| ||| ||||||||    
T  9057780 cctgacactg--acaatgaaaagatgaatatgcaccctgtggctttgaagtatttggaggctcaaccagatgct 9057851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 9057889 - 9058025
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcacaag-------cacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| |||||||||||||||||||||||||| |||||       |||||||||||| || |||||||| |||| |||||||||||||| |||||    
T  9057889 gtagcagctccgcaagaggcaaaggctctgatggcattacaagtagtgagcacatccaaacttgtctcaaaaagggtgtaatcaaaagcaatctcaaata 9057988  T
Q  330 tggttgactgtcatgagatgtttcttaatatgtgcta 366  Q
    || |||| ||  | |||||||||||||||||||||||    
T  9057989 tgtttgattgcaaggagatgtttcttaatatgtgcta 9058025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 16140480 - 16140329
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcacaag-------cacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| ||||||||||||||||||||||||||||||||       || |||||||||||| | ||||||  ||| ||||||||||| | ||||||    
T  16140480 gtagcagctctgcaagaggcaaaggctctgatggcatcacaagtagtgagcaaatccaaactcgtcttaaaaaggatgtaatcaaaagcaaccctaaata 16140381  T
Q  330 tggttgactgtcatgagatgtttcttaatatgtgctaggagctagttgtttg 381  Q
    || ||||||  || |||||||||||||||||||||||  || ||||||||||    
T  16140380 tgtttgacttccaggagatgtttcttaatatgtgctaatagttagttgtttg 16140329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 42080747 - 42080677
Alignment:
Q  278 agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatgagat 348  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||  ||||||| ||||||||||||||||    
T  42080747 agcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgtcatgagat 42080677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 40632829 - 40632958
Alignment:
Q  254 ggcaaaggctctgatggcatcaca-------agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatgag 346  Q
    |||||||| |||||||||||||||       |||| |||||||||| ||  |||||| | || |||||||||||||  ||||||| |||||| | ||| |    
T  40632829 ggcaaaggttctgatggcatcacaggtagtgagcatatccaaactcattctaaaaagggcgtaatcaaaagcaatcccaaatatgtttgactattatgcg 40632928  T
Q  347 atgtttcttaatatgtgctaggagctagtt 376  Q
    ||||||||||||||||||||| | ||||||    
T  40632929 atgtttcttaatatgtgctagtatctagtt 40632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 32230277 - 32230121
Alignment:
Q  27 gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag 126  Q
    |||| |||||||| || ||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| | ||||||  | |||     
T  32230277 gcagccaagaaaagtgcccaaattcttagcaaattttggggggatgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacac 32230180  T
Q  127 tgaaaagatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatgcta 185  Q
    ||||| |||||||||||||||| ||| | |||||| ||||| ||||||||| |||||||    
T  32230179 tgaaatgatgaatatgcaccctgtggctctgaagttcttggtggcacaatcggatgcta 32230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 30426421 - 30426270
Alignment:
Q  32 caagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaa 131  Q
    |||||||| || ||| |||||||| ||||||||| | || |||||||| ||||||||||| |||||||||||| |||| | ||||||  | ||| |||||    
T  30426421 caagaaaagtgcccaaattcttagcaaattttggagggacgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacactgaaa 30426324  T
Q  132 agatgaatatgcaccctatggttttgaagtacttggaggcacaatcagatgcta 185  Q
     |||||||||||||||| ||| | |||||| ||||  ||||||| |||||||||    
T  30426323 tgatgaatatgcaccctgtggctctgaagttcttgatggcacaaccagatgcta 30426270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 30426233 - 30426132
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcaca-------agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    |||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||| ||||||| |||| || |||| |||||  |||||    
T  30426233 gtagcagctctgcaagaggcaaaggctcggatggcatcacaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaata 30426134  T
Q  330 tg 331  Q
    ||    
T  30426133 tg 30426132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 41411571 - 41411479
Alignment:
Q  285 ccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatg-agatgtttcttaatatgtgctaggagctagtt 376  Q
    ||||||||||| ||||||| |||| |||||||||||||  ||||||   ||||||||||| ||||| ||||||| | ||||||| ||||||||    
T  41411571 ccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgtcatgtagatggttcttaaaaagtgctagtagctagtt 41411479  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 25862665 - 25862590
Alignment:
Q  278 agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaatatggttgactgtcatgagatgtttctt 355  Q
    |||||||||||||||| | ||||||| |||| || |||||||||| |||||||| ||||  |||||||||||||||||    
T  25862665 agcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatatgtttga--gtcatgagatgtttctt 25862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 32025240 - 32025313
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcaca-------agcacatccaaactcgtttcaaaaag 303  Q
    ||||||||||  |||||||||||||||| ||||||||||||       |||||||||||||||||| |||||||    
T  32025240 gtagcagctctacaagaggcaaaggctcggatggcatcacaagtagtgagcacatccaaactcgttccaaaaag 32025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 32033759 - 32033860
Alignment:
Q  237 gtagcagctcagcaagaggcaaaggctctgatggcatcaca-------agcacatccaaactcgtttcaaaaagagtgtcatcaaaagcaatcttaaata 329  Q
    ||||||||||  |||||||||||||||| ||||||||||||       |||| ||||||||||||| ||||||| |||| || |||  ||||| ||||||    
T  32033759 gtagcagctctacaagaggcaaaggctcggatggcatcacaagtagtgagcatatccaaactcgttccaaaaagggtgttataaaacacaatcctaaata 32033858  T
Q  330 tg 331  Q
    ||    
T  32033859 tg 32033860  T

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