View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_18 (Length: 434)
Name: NF17837_low_18
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 2835572 - 2835990
Alignment:
| Q |
16 |
gctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtttgttactcttgctggtgctc |
115 |
Q |
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| T |
2835572 |
gctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtttgttactcttgctggtgctc |
2835671 |
T |
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| Q |
116 |
ttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacctaaaagtatgttttctctatcttggatgtttcaatctttattt |
215 |
Q |
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| T |
2835672 |
ttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacttaaaagtatgttttctttatcttggatgtttcaatctttattt |
2835771 |
T |
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| Q |
216 |
tgttttatacatgaaagtatgttttgttagcagcggtggtcgaaccttggacatccttcttaataacccttcaacgtctcgactcatactactagctagg |
315 |
Q |
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| T |
2835772 |
tgttttatacatgaaagtatgttttgttagcagcggtggtcgaaccttggacatccttctttataacccttcaacgtctcgactcatactactagctagg |
2835871 |
T |
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| Q |
316 |
ctatgccttaagggacttggaagcttcattttttctttgttttgctaatgtcagatgttaatttgtctcggggagggagaatttgttagcagcgtgaatc |
415 |
Q |
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| T |
2835872 |
ctatgccttaagggacttggaagcttcattttttctttgttttgctaatgtcagatgttaatttgtctcggggagggagaatttgttagcagcatgaatc |
2835971 |
T |
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| Q |
416 |
gaatcctagacctctttct |
434 |
Q |
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| T |
2835972 |
gaatcctagacctctttct |
2835990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 44265395 - 44265223
Alignment:
| Q |
16 |
gctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtttgttactcttgctggtgctc |
115 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |||||||| | | |||||||||||||| ||| | |||||||| | ||||||||||||| |
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| T |
44265395 |
gctttggttaaggttgctaaattggttgattgttaccttgctgaagctggtttggatgctaatttgagtttgtctcagtttgttgcacttgctggtgctc |
44265296 |
T |
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| Q |
116 |
ttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacctaaaagtatgttttct |
188 |
Q |
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| T |
44265295 |
ttcctaatcatgcaagagctactgatgatggtttatatagagccattgacacttatcttaaagtacgttttct |
44265223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 13867794 - 13867865
Alignment:
| Q |
238 |
tttgttagcagcggtggtcgaaccttggacatccttcttaataacccttcaacgtctcgactcatactacta |
309 |
Q |
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| T |
13867794 |
tttgttagcagcaggggtcgaaccctggacctccttcttaatactccttcagcgtcccaactcataccacta |
13867865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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