View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_2 (Length: 616)
Name: NF17837_low_2
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Original strand, 46038751 - 46039368
Alignment:
| Q |
14 |
gtttttgatttaaatgtatttattttgtcttcatggttgcacaaatatgagattttagtatgtttctttttgttggtagaacatacaactgtggtgatgt |
113 |
Q |
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| T |
46038751 |
gtttttaatttaaatgtatttattttgtcttcatggttgcacaaatatgagattttagtatgtttctttttgttggtagaacatacaactgtggtgatat |
46038850 |
T |
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| Q |
114 |
aattctttgctaccaatgtagaaaatgagattaaaacacaattttttaaatgacataaaatcgaaatatttttagaaaaatatcacctcaccaaaatcga |
213 |
Q |
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| T |
46038851 |
aattctttgctaccaatgtagaaaatgagattaaaacacaattttttaaatgacataaaatcgaaatatttttagaaaaatatcacctcaccaaaatcga |
46038950 |
T |
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| Q |
214 |
agtatatgtatgcaaatgtttgcacgaatatttaatatatccattgaaatcaagatacaatcatctat----------------------atagacacat |
291 |
Q |
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| T |
46038951 |
agtatatgtatgcaaatgtttgcacgaatatttaatatatccattgaaatcaagatacaatcatctatactctcctaaacaagtaagtacatagacacat |
46039050 |
T |
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| Q |
292 |
gcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcatataactaatctcaagaagaattgnnnnnnnntaaaattaagat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| |||| |
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| T |
46039051 |
gcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcata-acttaatctcaagaagaattg-aaaaaaatcaaattcagat |
46039148 |
T |
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| Q |
392 |
tctatcattaattaaagcgacattaatgactattttactagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattcttaccactaaa |
491 |
Q |
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| T |
46039149 |
tctatcgttaattaaagcgacattaatgactattttaccagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattcttaccactaaa |
46039248 |
T |
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| Q |
492 |
ctgacacctcattgatagactaaaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgtagtgctggatttacacatgcaaa |
591 |
Q |
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| T |
46039249 |
ctgacacctcattgatagactacaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgtagtgctggatttacacatgcaaa |
46039348 |
T |
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| Q |
592 |
cattgattgcctttgcttct |
611 |
Q |
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| T |
46039349 |
cattgattgcctttgtttct |
46039368 |
T |
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