View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_20 (Length: 418)
Name: NF17837_low_20
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 5172127 - 5171744
Alignment:
| Q |
19 |
gggacattattgcgctatgagaggtggaagatccaagatgatataaggcctcatattttctgtattaagcttaaagctcatatttctcaccatagaaatc |
118 |
Q |
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| T |
5172127 |
gggacattattgcgctatgagaggtggaagatccaagatgatataaggcctcatattttctgtattaagcttaaagctcatatttctcaccatagaaatc |
5172028 |
T |
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| Q |
119 |
tcgtaggaccccttcatcattcctaacacaactgaattttacagattgaaacgtggctgttgtacccaacactaacagtttgttgttgtgtctatataaa |
218 |
Q |
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| T |
5172027 |
tcgtaggaccccttcatcattcctaacacagctgaattttacagattgaaacgtggctgttgtacccaacactaacagtttgttgttgtgtctatataac |
5171928 |
T |
|
| Q |
219 |
ctgtgcttttatgttgggccctttgttacctctagcggaggcagttatgtactcagttggaaagataattgctctttaggcacttgctatttcaaccgca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
5171927 |
ctgtgcttttatgttgggccctttgttacctctagcggaggcagttatgtgctcagttgg-aagataattgctctttaggcacttgctatttcaacggca |
5171829 |
T |
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| Q |
319 |
gttaactatcattcgttcgtttattcacagtagttaattgatgttcattcaatatcagcggcagttaactaccgttgtgttttgttcat |
407 |
Q |
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||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5171828 |
gttaactatca----ttcgtttatttacagtatttaattgatgttcattcaatatcagcggcagttaactaccgctgtgttttgttcat |
5171744 |
T |
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