View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_23 (Length: 404)
Name: NF17837_low_23
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 1936291 - 1935914
Alignment:
| Q |
13 |
atgattaaaagattaggctgcttctaatttccaagcaacctaatggcaataattcatttgattacacattgtttacatcaactagtcctgtgtgtagaaa |
112 |
Q |
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| T |
1936291 |
atgattaaaagattaggctgcttctaatttccaagcaacctaatggcaataattcatttgattacacattgtttacatcaactagtcctgtgtgtagaaa |
1936192 |
T |
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| Q |
113 |
ccaagataggatatggacaaataatcaaataaacaatttgatatctggatcttgattctatgaataggatcatgtatgtatttatatatgctgctataga |
212 |
Q |
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| T |
1936191 |
ccaagataggatatggacaaataatcaaataaacaatttgatatctggatcttgattctatgaataggatcatgtatgtatttatatatgctgctataga |
1936092 |
T |
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| Q |
213 |
ttttgattctttggaaccaaacaattgaacaattttgaaattannnnnnngagggaaacaattttgaaattattaaatactaattttagtaaatcaagta |
312 |
Q |
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| T |
1936091 |
ttttgattctttggaaccaaacaaatgaacaattttgaaattatttttttgagggaaacaattttgaaattattaaatactaattttagtaaatcaagta |
1935992 |
T |
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| Q |
313 |
gttcaacacatgctacatgtgggttcgaggggttcaaaaattgatattgtcacgtgtgcaagttatggaggtctttct |
390 |
Q |
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| T |
1935991 |
gttcaacacatgctacatgtgggttcgaggggttcaaaaattgatattgtcacgtgtgcaagttatggaggtctttct |
1935914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 1935725 - 1935676
Alignment:
| Q |
275 |
tttgaaattattaaatactaattttagtaaatcaagtagttcaacacatg |
324 |
Q |
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| T |
1935725 |
tttgaaattattaattactaattttagtaaagcaagtagttcaacacatg |
1935676 |
T |
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