View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_25 (Length: 387)
Name: NF17837_low_25
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_25 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 65 - 368
Target Start/End: Original strand, 13844375 - 13844670
Alignment:
| Q |
65 |
gagtttgtttaagaatgtttgtactacatatacttagattgaaaaagaagataacctttgaacgagtaataaacttccatccgcaagaagtagtgaagag |
164 |
Q |
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| T |
13844375 |
gagtttgtttaagaatgttcgta----atatacttagattgaaaaagaagataacctttgaacgagtaataaacttccatccgcaagaagtagtgaagag |
13844470 |
T |
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| Q |
165 |
ttactaatattcaaggaaattggataataagaagaaaaaagtgggnnnnnnnttttgttttatattttacaaaatgatcattagcatataaagttaaagt |
264 |
Q |
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| T |
13844471 |
ttactaatattcaaagaaattggataataagaagaaaaaagtgggaaaaaaattg-gttttatattttacaaaatgatcattagcacataaagttaaagt |
13844569 |
T |
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| Q |
265 |
aatcattagttttaaaaaggacaattataaaaatttgttaagagtacaatttttatatattgttattgttagtagatacaagtccgtgagaatctggtct |
364 |
Q |
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| T |
13844570 |
aatcattagtttaaaaaaggacaattataaaattttgtt---agtacaatttttatatattgttattgttagtagatacaagtccgtgagaatctggtct |
13844666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 13844327 - 13844362
Alignment:
| Q |
12 |
acatcatcaaagggaacatatctcttgatttggtat |
47 |
Q |
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| T |
13844327 |
acatcatcaaagggaacatatctcttgatttggtat |
13844362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 26243386 - 26243432
Alignment:
| Q |
274 |
ttttaaaaaggacaattataaaaatttgttaagagtacaatttttata |
321 |
Q |
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| T |
26243386 |
ttttaaaaaggacaattatgaaaatttgtt-agagtacaatttttata |
26243432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 26121207 - 26121249
Alignment:
| Q |
278 |
aaaaaggacaattataaaaatttgttaagagtacaatttttata |
321 |
Q |
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| T |
26121207 |
aaaaaggacaattatgaaaatttgtt-agagtacaatttttata |
26121249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 43473151 - 43473205
Alignment:
| Q |
274 |
ttttaaaaaggacaattataaaaatttgttaagagtacaatttttatatattgtta |
329 |
Q |
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| T |
43473151 |
ttttaaaaaggacaattataaaattttgct-ggagtacgatttttatatattgtta |
43473205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 21729 - 21629
Alignment:
| Q |
222 |
ttttatattttacaaaatgatcatta-gcatataaagttaaagtaatcattagttttaaaaaggacaattataaaaatttgttaagagtacaatttttat |
320 |
Q |
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||||||||||| ||||| ||||||| ||| ||||| |||| || |||| ||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
21729 |
ttttatattttg-aaaattatcattaagcacataaaattaaggtggtcatgagtttaagaaaggacaattataaaaatttgtt-gtagtacaatttttat |
21632 |
T |
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| Q |
321 |
ata |
323 |
Q |
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||| |
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| T |
21631 |
ata |
21629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 22497241 - 22497342
Alignment:
| Q |
228 |
attttacaaaatgatcatta-gcatataaagttaaagtaatcattagttttaaaaaggacaattataaaaatttgttaagagtacaatttttatatattg |
326 |
Q |
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||||| |||| ||| ||||| ||| ||||| |||||| ||||| |||||||| |||||||||||||||| |||||| | | |||||||||||||||| |
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| T |
22497241 |
attttgcaaattgaccattatgcacataaaattaaagagatcatgagttttaataaggacaattataaaattttgtt-gtacttcaatttttatatattg |
22497339 |
T |
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| Q |
327 |
tta |
329 |
Q |
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||| |
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| T |
22497340 |
tta |
22497342 |
T |
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