View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_27 (Length: 381)
Name: NF17837_low_27
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_27 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 66 - 363
Target Start/End: Complemental strand, 24914046 - 24913749
Alignment:
| Q |
66 |
aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata |
165 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||| || |
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| T |
24914046 |
aataattttagacgcctccacaacagtactataactgcaattgcgaccgcatcaaccccattttcctgcgttttaccacaatataaaagtttgcagtgta |
24913947 |
T |
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| Q |
166 |
accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24913946 |
accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata |
24913847 |
T |
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| Q |
266 |
tttctgaggtgtctagagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgattg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
24913846 |
tttctgaggtgtctagagtatgcaagaagctgagccttacggttacaaccacgtcttgtttttgattcacattgtgacttgattttctttgatgattg |
24913749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 24989880 - 24989751
Alignment:
| Q |
54 |
ttgcaatatagcaataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaa |
153 |
Q |
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||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |
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| T |
24989880 |
ttgcagtatagtaataattttagacgcctccacaataacactataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaa |
24989781 |
T |
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| Q |
154 |
gtttgcagcataaccgcaaatgtgacaaca |
183 |
Q |
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| T |
24989780 |
gtttgcagcataactgcaaatgcgacaaca |
24989751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 24913623 - 24913506
Alignment:
| Q |
66 |
aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata |
165 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
24913623 |
aataattttagacgcctccacaacaactctataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaagtttgcagcata |
24913524 |
T |
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| Q |
166 |
accgcaaatgtgacaaca |
183 |
Q |
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|| ||||||| ||||||| |
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| T |
24913523 |
actgcaaatgcgacaaca |
24913506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 24989748 - 24989667
Alignment:
| Q |
281 |
gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt |
362 |
Q |
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| T |
24989748 |
gagtatgcaagaagttgagccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt |
24989667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 24913503 - 24913422
Alignment:
| Q |
281 |
gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt |
362 |
Q |
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|||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
24913503 |
gagtatgcaagaagttgaaccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt |
24913422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24914155 - 24914118
Alignment:
| Q |
1 |
tttcacaaaccataaacgcttctgtaaaaatttcacaa |
38 |
Q |
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| T |
24914155 |
tttcacaaaccataaacgcttctgtaaaaatttcacaa |
24914118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24989978 - 24989941
Alignment:
| Q |
1 |
tttcacaaaccataaacgcttctgtaaaaatttcacaa |
38 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
24989978 |
tttcacaaaccataaacgcttatgtaaaaatttcacaa |
24989941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 26231 - 26157
Alignment:
| Q |
54 |
ttgcaatatagcaataatttt-aga-cgcctccacaacaacactataactgcaattgc-gaccgcatcaaccaca |
125 |
Q |
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||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
26231 |
ttgcagtatagtaataatttttagaacgcctccacaataacactataactgcaattgcagcccgcatcaaccaca |
26157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 22601548 - 22601584
Alignment:
| Q |
136 |
ttttaccacaatataaaagtttgcagcataaccgcaa |
172 |
Q |
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|||||| |||||||||| ||||||||||||||||||| |
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| T |
22601548 |
ttttactacaatataaaggtttgcagcataaccgcaa |
22601584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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