View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_31 (Length: 359)
Name: NF17837_low_31
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 34364520 - 34364874
Alignment:
| Q |
1 |
catggcactaacattacacgaattaacattttgaaaaaatgagttaactgaatgcaatcacatgtatcgctatttgatagcggtacatatttggacacca |
100 |
Q |
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| T |
34364520 |
catggcactaacattacacgaattaacattttgaaaaaatgagttaactgaatgtaatcacatgtatcgctatttgatatcggtacatatttggacacca |
34364619 |
T |
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| Q |
101 |
cgcatggcttctatccgaagtgtcgcttatactattgaaatactgttttagttcagctgaagggaaaaaagatattgtcacacagatgattacttactat |
200 |
Q |
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| T |
34364620 |
cacatgccttctatccgaagtgtcgcttatactattgaaatactgttttagttcagctgaagggaaaaaacatattgtcacacagatgattacttactat |
34364719 |
T |
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| Q |
201 |
ttaagttgtgtctttgtactgtatgttatgcttgattttgtgtcactagcatccatttaacgtaatcttctcttgtgttaagtggaccatttgcatttga |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34364720 |
ttaagttgtgtctttgta----atgttatgcttgattttgtgtcactagcatccatttaacgtaatcttctcttgtgttaagtggaccatttgcatttga |
34364815 |
T |
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| Q |
301 |
gatgctgatacaagaattaatgttaaattcttcctcagtgaaagatgaactaactcttt |
359 |
Q |
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| T |
34364816 |
gatgctgataaaagaattaatgttaaattcttcatcagtgaaaggtgaattaactcttt |
34364874 |
T |
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