View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_37 (Length: 338)
Name: NF17837_low_37
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 50416845 - 50417158
Alignment:
| Q |
17 |
aacaaattgattctatagacagctttcattgttgccagtttaattgccaggaatttttcttctttatgggaccctctcttgtatctatcatcatatatag |
116 |
Q |
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| T |
50416845 |
aacaaattgattctatagacagctttcattgttgccagtttaattgccaggaatttttcttctttatgggaccctctcttgtatctatcatcatatatag |
50416944 |
T |
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| Q |
117 |
cagaagaatagcttagattagcaacaatagttattgcttgaactctctactcacgtgtgtaccttaatttatgtttacataagacacaattgaaacagtt |
216 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50416945 |
cagcagaatagcttagattagcaacaatagttgttgcttgaactctctactcacgtgtgtaccttaatttatgtttacataagacacaattgaaacagtt |
50417044 |
T |
|
| Q |
217 |
actcattgctaatgtacataagtatgacatgtcacatgtggtatatggtgaactcatattgaaaattgcttaaaactcgaagtagaaatccagggtcttc |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50417045 |
actcattgctaatgtacagaagtatgacatgtcacatgtggtatatggtgaactcatattgaaaattgcttaaaactcgaagtagaaatccagggtcttc |
50417144 |
T |
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| Q |
317 |
tactaccctatgtt |
330 |
Q |
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||||||| |||||| |
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| T |
50417145 |
tactaccttatgtt |
50417158 |
T |
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