View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_38 (Length: 334)
Name: NF17837_low_38
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 3895612 - 3895319
Alignment:
| Q |
19 |
actctgaccataacgctgactccccaattcatgaacaccatcatctactactacaccagaaccaccactaccacgnnnnnnnnnnnnnnnnnnnnncttt |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3895612 |
actctggccataacgctgactccccaattcatgaacaccatcatctactactacaccagaaccaccactaccacgatcatcatcatcatcatc---cttt |
3895516 |
T |
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| Q |
119 |
ccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaagcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895515 |
ccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaagcct |
3895416 |
T |
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| Q |
219 |
ctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895415 |
ctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
3895319 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 28702684 - 28702740
Alignment:
| Q |
37 |
actccccaattcatgaacaccatcatctactactacaccagaaccaccactaccacg |
93 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||| || |||||||||||| |
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| T |
28702684 |
actcctcaattcatgaacatgctcatctactaccacaccagcacaaccactaccacg |
28702740 |
T |
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