View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_4 (Length: 579)
Name: NF17837_low_4
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 15 - 573
Target Start/End: Complemental strand, 39751829 - 39751271
Alignment:
| Q |
15 |
gtttatatgctatttatagtaaaaacgaagaaaaagtagtagcatacagggttatgaaatgcttcccaaacagctttcaagacagagattatgtctgttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751829 |
gtttatatgctatttatagtaaaaacgaagaaaaagtagtagcatacagggttatgaaatgcttcccaaacagctttcaagacagagattatgtctgttt |
39751730 |
T |
|
| Q |
115 |
tggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751729 |
tggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacag |
39751630 |
T |
|
| Q |
215 |
aaaatccacaaggaaccccaacctgttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatggctata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751629 |
aaaatccacaaggaaccccaacctgttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatggctata |
39751530 |
T |
|
| Q |
315 |
gacatagttattagttagtacaagaagataattttcacctgaataatccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatgagctt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751529 |
gacatagttattagttagtacaagaagataattttcacctgaatagtccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatgagctt |
39751430 |
T |
|
| Q |
415 |
tgtataaccaattggatcagtagaagggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctatttctctt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751429 |
tgtataaccaattggatcagtagaagggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctatttctctt |
39751330 |
T |
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| Q |
515 |
gatgttcccattacagcgtatataagcggtggtacaacactcgtatctatttcatttca |
573 |
Q |
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| T |
39751329 |
gatgttcccattacagcgtatataagcggtggtacaacactcgtatctatttcatttca |
39751271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 33270319 - 33270399
Alignment:
| Q |
159 |
agaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg |
239 |
Q |
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| T |
33270319 |
agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
33270399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 25707106 - 25707238
Alignment:
| Q |
108 |
tctgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcat |
207 |
Q |
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||||||||||| || || || ||||| || || || ||||| | ||| ||||||||||| | || || |||||||| | |||||||| | |||||||| |
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| T |
25707106 |
tctgttttggtggtgaagtgagtaatccccaaaagacccttgagctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcat |
25707205 |
T |
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| Q |
208 |
gtgacagaaaatccacaaggaaccccaacctgt |
240 |
Q |
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|||| |||||||||||||| || |||||||||| |
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| T |
25707206 |
gtgaaagaaaatccacaagaaaacccaacctgt |
25707238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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