View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_low_40 (Length: 332)

Name: NF17837_low_40
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_low_40
NF17837_low_40
[»] chr7 (4 HSPs)
chr7 (10-317)||(9015932-9016239)
chr7 (10-115)||(10609159-10609265)
chr7 (12-115)||(20937654-20937758)
chr7 (208-317)||(13276018-13276128)
[»] chr4 (2 HSPs)
chr4 (23-115)||(20374757-20374850)
chr4 (45-90)||(18118314-18118359)
[»] chr2 (2 HSPs)
chr2 (18-114)||(20425476-20425573)
chr2 (12-115)||(25971853-25971957)
[»] chr6 (5 HSPs)
chr6 (190-317)||(16163991-16164119)
chr6 (191-283)||(17806798-17806891)
chr6 (191-257)||(20191063-20191130)
chr6 (191-257)||(22144861-22144928)
chr6 (191-251)||(13779236-13779297)
[»] chr3 (3 HSPs)
chr3 (190-315)||(268498-268624)
chr3 (191-264)||(14140582-14140656)
chr3 (221-292)||(8990352-8990424)
[»] chr1 (4 HSPs)
chr1 (10-108)||(29303792-29303891)
chr1 (45-108)||(41344737-41344800)
chr1 (12-115)||(22523643-22523747)
chr1 (53-108)||(21463904-21463959)
[»] chr5 (2 HSPs)
chr5 (203-283)||(22850339-22850420)
chr5 (191-260)||(26864598-26864668)
[»] scaffold0757 (1 HSPs)
scaffold0757 (191-274)||(2862-2946)
[»] scaffold0401 (1 HSPs)
scaffold0401 (191-283)||(5767-5860)
[»] scaffold0125 (1 HSPs)
scaffold0125 (52-108)||(36396-36452)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 9016239 - 9015932
Alignment:
Q  10 aagaaaatcggatggagttgcaagcagaccaaatatattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggt 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9016239 aagaaaatcggatggagttgcaagcacaccaaatatattaatagtatgcaagattgctgctaaatatatgtctaccacttgagaagagcatcttgctggt 9016140  T
Q  110 ctacaaacaacacatttaaagatgccatatatgttaataacgatttaaagaatatttgttaacaacacatttaaatatatgtcacctgcacatacaccaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9016139 ctacaaacaacacatttaaagatgccatatatgttaataacgatttaaagaatatttgttaacaacacatttaaatatatgtcacctgcaaatacaccaa 9016040  T
Q  210 agggacatttcagtggattcatttcaatccatattttctcattctttcaaatgatattcgaaggtgttctaaattatcatcttccaacgaagaatttaca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  9016039 agggacatttcagtggattcatttcaatccatattttctcattctttcaaatgaaagtcgaaggtgttctaaattatcatcttccaacgaagaatttaca 9015940  T
Q  310 acaatatc 317  Q
    ||||||||    
T  9015939 acaatatc 9015932  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 10609159 - 10609265
Alignment:
Q  10 aagaaaatcggatggagttgcaagcagaccaaatat-attaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctgg 108  Q
    |||||||  |||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  10609159 aagaaaaatggatggagttgcgagcacaccaaatattattaagagtatgcaagattgctgctagatatatgtccgccacttgagaagagcatcttgctgg 10609258  T
Q  109 tctacaa 115  Q
    |||||||    
T  10609259 tctacaa 10609265  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 20937654 - 20937758
Alignment:
Q  12 gaaaatcggatggagttgcaagcagaccaaata-tattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggtc 110  Q
    ||||| ||||||||||||| |||  |||||||| ||| || ||||||||| |||||||||| ||| || |||||||||||||| ||||| ||||||||||    
T  20937654 gaaaaccggatggagttgcgagcgcaccaaatagtatgaagagtatgcaatattgctgctagataaatttctgccacttgagaggagcagcttgctggtc 20937753  T
Q  111 tacaa 115  Q
    |||||    
T  20937754 tacaa 20937758  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 317
Target Start/End: Original strand, 13276018 - 13276128
Alignment:
Q  208 aaagggacatttcagtggattcattt-caatccatattttctcattctttcaaatgatattcgaaggtgttctaaattatcatcttccaacgaagaattt 306  Q
    ||||| |||||||| ||||||||||| ||||||||| |||||||| || |  ||||||| |||||||||||  |||| ||| |||||| ||||||| |||    
T  13276018 aaaggcacatttcaatggattcattttcaatccatactttctcatcctcttgaatgataatcgaaggtgtttcaaatgatcgtcttccgacgaagatttt 13276117  T
Q  307 acaacaatatc 317  Q
    || ||||||||    
T  13276118 accacaatatc 13276128  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 20374757 - 20374850
Alignment:
Q  23 ggagttgcaagcagaccaaatat-attaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggtctacaa 115  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  20374757 ggagttgcaagcacaccaaatattattaagagtatgcaagattgctgctagatatatgtccgccacttgagaagagcatcttgctggtctacaa 20374850  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 18118314 - 18118359
Alignment:
Q  45 tattaatagtatgcaagattgctgctaaatatatgtctgccacttg 90  Q
    ||||||| |||||||||| ||||||||| || ||||||||||||||    
T  18118314 tattaattgtatgcaagactgctgctaactagatgtctgccacttg 18118359  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 20425573 - 20425476
Alignment:
Q  18 cggatggagttgcaagcagaccaaatat-attaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggtctaca 114  Q
    ||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  20425573 cggatagagttgcgagcacaccaaatattattaagagtatgcaagattgctgctagatatatgtccgccacttgagaagagcatcttgctagtctaca 20425476  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 25971853 - 25971957
Alignment:
Q  12 gaaaatcggatggagttgcaagcagaccaaata-tattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggtc 110  Q
    ||||| ||||||||||||| |||  |||||||| ||| || ||||||||| |||||||||| |||||| || ||||||||||| ||||| ||||||||||    
T  25971853 gaaaaccggatggagttgcgagcgcaccaaatagtatgaagagtatgcaatattgctgctagatatatttccgccacttgagaggagcagcttgctggtc 25971952  T
Q  111 tacaa 115  Q
    |||||    
T  25971953 tacaa 25971957  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 16163991 - 16164119
Alignment:
Q  190 gtcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcattctttcaaatgatattcgaaggtgttctaaattatca 288  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||| | || ||||| || || || ||||    
T  16163991 gtcacctgcacatacaccaaaggcacatttcagtgggttcatttttaatccatattttctcattctttcaaatgacagtcaaaggtattttagatgatca 16164090  T
Q  289 tcttccaacgaagaatttacaacaatatc 317  Q
    |||| | ||||||| ||||| | ||||||    
T  16164091 tctttcgacgaagattttaccataatatc 16164119  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 17806798 - 17806891
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattcattt-caatccatattttctcattctttcaaatgatattcgaaggtgttctaaat 283  Q
    ||||||||||  |||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  17806798 tcacctgcacgcacacaaaaggcacgtttcaatggattcattttcaatccatattttctcattctttcgaatgattttcaaaggtgatctaaat 17806891  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 20191063 - 20191130
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcattctttc 257  Q
    ||||||||||  |||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||    
T  20191063 tcacctgcacgaacaccaaaggaacatttcaatggattcattttcaatccatattttctcatcctttc 20191130  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 22144928 - 22144861
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcattctttc 257  Q
    ||||||||||  |||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||    
T  22144928 tcacctgcacgaacaccaaaggaacatttcaatggattcattttcaatccatattttctcatcctttc 22144861  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 13779297 - 13779236
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcat 251  Q
    ||||||||||  |||||||||| |||||||| |||||||| ||| |||||||||||||||||    
T  13779297 tcacctgcaccaacaccaaaggcacatttcaatggattcattttaaatccatattttctcat 13779236  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 315
Target Start/End: Original strand, 268498 - 268624
Alignment:
Q  190 gtcacctgcacatacaccaaagggacatttcagtggattcattt-caatccatattttctcattctttcaaatgatattcgaaggtgttctaaattatca 288  Q
    ||||| ||||||||| ||||| | |||||| | ||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||| ||||  |||    
T  268498 gtcacttgcacatacgccaaatgcacattttaatggattcattttcaatccatattttctcattctttcgaatgataattgaaggtgttccaaatggtca 268597  T
Q  289 tcttccaacgaagaatttacaacaata 315  Q
    |||||| | ||| | ||||| ||||||    
T  268598 tcttccgatgaaaattttaccacaata 268624  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 14140656 - 14140582
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcattctttcaaatgat 264  Q
    ||||||||||  |||||||||| |||||| | |||||||| ||||||||||||||||||||| || || ||||||    
T  14140656 tcacctgcacgaacaccaaaggcacattttaatggattcattttcaatccatattttctcatcctctcgaatgat 14140582  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 8990352 - 8990424
Alignment:
Q  221 agtggattcatttc-aatccatattttctcattctttcaaatgatattcgaaggtgttctaaattatcatctt 292  Q
    |||||||||||||  |||| || |||||||||||||||||||||| || |||||||  |||||| | ||||||    
T  8990352 agtggattcatttttaatctatgttttctcattctttcaaatgatttttgaaggtggcctaaatgaccatctt 8990424  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 29303792 - 29303891
Alignment:
Q  10 aagaaaatcggatggagttgcaagcagaccaaata-tattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctgg 108  Q
    ||||||| || |||||||| | |||  |||||||| ||||||| |||||||||| |||||||||||| |||||||||||| | |||||||||||||||||    
T  29303792 aagaaaaacgaatggagttacgagcccaccaaatagtattaattgtatgcaagactgctgctaaatagatgtctgccactggtgaagagcatcttgctgg 29303891  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 41344737 - 41344800
Alignment:
Q  45 tattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctgg 108  Q
    ||||||| |||||||||| ||||||||| || |||||||||||||| |||||||||||||||||    
T  41344737 tattaattgtatgcaagactgctgctaactagatgtctgccacttgtgaagagcatcttgctgg 41344800  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 22523643 - 22523747
Alignment:
Q  12 gaaaatcggatggagttgcaagcagaccaaata-tattaatagtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctggtc 110  Q
    ||||| ||||||||||||| |||  |||||||| ||| || ||||||||| |||||||||| ||| || || ||||||||||| ||||| ||||||| ||    
T  22523643 gaaaaccggatggagttgcgagcgcaccaaatagtatgaagagtatgcaatattgctgctagataaatttcagccacttgagaggagcagcttgctgatc 22523742  T
Q  111 tacaa 115  Q
    |||||    
T  22523743 tacaa 22523747  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 21463959 - 21463904
Alignment:
Q  53 gtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctgg 108  Q
    ||||||||||||||||||||| | ||||| ||||||||||| ||||| || |||||    
T  21463959 gtatgcaagattgctgctaaaaaaatgtccgccacttgagaggagcagctcgctgg 21463904  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 22850339 - 22850420
Alignment:
Q  203 acaccaaagggacatttcagtggattcattt-caatccatattttctcattctttcaaatgatattcgaaggtgttctaaat 283  Q
    |||||||| | |||||||| ||||||||||| |||||||||||||||||||||||| || ||| || ||||||| |||||||    
T  22850339 acaccaaaagcacatttcaatggattcattttcaatccatattttctcattctttcgaacgatctttgaaggtgatctaaat 22850420  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 26864598 - 26864668
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattcattt-caatccatattttctcattctttcaaa 260  Q
    |||||||||| ||||||||| | | |||| | ||||||||||| ||||||||||||||| |||||||||||    
T  26864598 tcacctgcacgtacaccaaatgcaaattttaatggattcattttcaatccatattttctaattctttcaaa 26864668  T

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Target: scaffold0757 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 2946 - 2862
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattcattt-caatccatattttctcattctttcaaatgatattcgaaggt 274  Q
    ||||||||||  | |||||||| |||||| | ||||||||||| |||||||||||| ||||| ||||| ||||||| | ||||||    
T  2946 tcacctgcacgaataccaaaggcacattttaatggattcattttcaatccatatttcctcatcctttcgaatgatagttgaaggt 2862  T

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Target: scaffold0401 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 5860 - 5767
Alignment:
Q  191 tcacctgcacatacaccaaagggacatttcagtggattca-tttcaatccatattttctcattctttcaaatgatattcgaaggtgttctaaat 283  Q
    |||||| ||| ||||||||| | |||||| | |||||||| |||||||||| |||||| ||| ||||| ||||||  | ||||||| |||||||    
T  5860 tcacctacacgtacaccaaatgcacattttaatggattcattttcaatccaaattttcccatcctttcgaatgattgttgaaggtgatctaaat 5767  T

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Target: scaffold0125 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 36396 - 36452
Alignment:
Q  52 agtatgcaagattgctgctaaatatatgtctgccacttgagaagagcatcttgctgg 108  Q
    ||||| |||||||||||||||| | |||||||||||||| || ||||| || |||||    
T  36396 agtatacaagattgctgctaaaaaaatgtctgccacttgggaggagcaactcgctgg 36452  T

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