View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_42 (Length: 319)
Name: NF17837_low_42
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_42 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 38257914 - 38258215
Alignment:
| Q |
19 |
ctatggctatggggaagtaagaaaaaa-gcaaagaaattgccaccaggtccaaaaggattaccaattttgggtagtcttctaaaactaggaccaaaccct |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38257914 |
ctatggctatggggaagtaagaaaaaaagcaaagaaattgccaccaggtccaaaaggattaccaattttgg-tagtcttctaaaactaggaccaaaccct |
38258012 |
T |
|
| Q |
118 |
catcgtgatcttcacaaactatcccaaaaatatggaccaattatgcacttacgtttaggtttagtaccaaccatagttgtttcttcacctcaagctgctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
38258013 |
catcgtgatcttcacaaactatcccaaaaatatggaccaattatgcacttacgtttaggtttagtaccaatcatagttgtttcttcacctcaagcagctg |
38258112 |
T |
|
| Q |
218 |
aacttttcctcaagactcatgatcttgtctttgcaagcagaccaccaattgaggcagc-aaaaatcatcggttgggatcggaggaacttgagttttggtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258113 |
aacttttcctcaagactcatgatcttgtctttgcaagcagaccaccaattgaggcagcaaaaaatcatcggttgggatcggaggaacttgagttttggtg |
38258212 |
T |
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| Q |
317 |
aat |
319 |
Q |
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||| |
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| T |
38258213 |
aat |
38258215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 38261676 - 38261971
Alignment:
| Q |
24 |
gctatggggaagtaagaaaaaagcaaagaaattgccaccaggtccaaaaggattaccaattttgggtagtcttctaaaactaggaccaaaccctcatcgt |
123 |
Q |
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||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||| |||| |||||||||||||| |
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| T |
38261676 |
gctatggggaaacaagaccaaagcaaagaaattaccaccaggtccaaaaggattaccaattttaggcagccttctaaaattaggtgcaaaccctcatcgt |
38261775 |
T |
|
| Q |
124 |
gatcttcacaaactatcccaaaaatatggaccaattatgcacttacgtttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaacttt |
223 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
38261776 |
gatcttcaccaactatcccaaaaatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttt |
38261875 |
T |
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| Q |
224 |
tcctcaagactcatgatcttgtctttgcaagcagaccaccaattgaggcagcaaaaatcatcggttgggatcggaggaacttgagttttggtgaat |
319 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| | |||||||||||| ||| |||||| | ||||||||||||||||||||||| |
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| T |
38261876 |
tcctcaaaactcatgatcttgtctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaat |
38261971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 8974 - 8722
Alignment:
| Q |
22 |
tggctatggggaagtaagaaaaaagcaaagaaattgccaccaggtccaaaaggattaccaattttgggtagtcttctaaaactaggaccaaaccctcatc |
121 |
Q |
| |
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||||||||||||| |||| |||| |||| |||||| ||||||||||||||| | |||||||||||||| ||||| || |||| |||||||||||| |
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| T |
8974 |
tggctatggggaaacgagaataaagtaaagggattgcctccaggtccaaaaggagtgccaattttgggtagccttctcaagttaggggcaaaccctcatc |
8875 |
T |
|
| Q |
122 |
gtgatcttcacaaactatcccaaaaatatggaccaattatgcacttacgtttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaact |
221 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8874 |
ttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaact |
8775 |
T |
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| Q |
222 |
tttcctcaagactcatgatcttgtctttgcaagcagaccaccaattgaggcag |
274 |
Q |
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|| ||||||||||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
8774 |
ctttctcaagactcatgattttgtctttgcaagtagaccacctattgaggcag |
8722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 43 - 276
Target Start/End: Original strand, 27411729 - 27411962
Alignment:
| Q |
43 |
aaagcaaagaaattgccaccaggtccaaaaggattaccaattttgggtagtcttctaaaactaggaccaaaccctcatcgtgatcttcacaaactatccc |
142 |
Q |
| |
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|||| ||||| |||||| |||||||| ||| || || ||||||||||| ||||| || |||| |||||||||||| |||||| ||||||||||||| |
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| T |
27411729 |
aaagtaaagagattgcctccaggtcccgtagggttgccgattttgggtagccttctcaagttaggggcaaaccctcatcttgatctacacaaactatccc |
27411828 |
T |
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| Q |
143 |
aaaaatatggaccaattatgcacttacgtttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatct |
242 |
Q |
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|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
27411829 |
aaaaatatggaccaataatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatat |
27411928 |
T |
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| Q |
243 |
tgtctttgcaagcagaccaccaattgaggcagca |
276 |
Q |
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|||||||||||| |||||||| |||||||||||| |
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| T |
27411929 |
tgtctttgcaagtagaccacctattgaggcagca |
27411962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 284
Target Start/End: Original strand, 4528 - 4769
Alignment:
| Q |
43 |
aaagcaaagaaattgccaccaggtccaaaaggattaccaattttgggtagtcttctaaaactaggaccaaaccctcatcgtgatcttcacaaactatccc |
142 |
Q |
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|||| ||||| |||||| |||||||| ||| || |||||||||||||| ||||| || |||| |||||||||||| |||| | ||||||||||||| |
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| T |
4528 |
aaagtaaagagattgcctccaggtcccgtagggttgccaattttgggtagccttctcaagttaggggcaaaccctcatcttgatttgcacaaactatccc |
4627 |
T |
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| Q |
143 |
aaaaatatggaccaattatgcacttacgtttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatct |
242 |
Q |
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|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4628 |
aaaaatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatct |
4727 |
T |
|
| Q |
243 |
tgtctttgcaagcagaccaccaattgaggcagcaaaaatcat |
284 |
Q |
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| ||||||| || |||||||| |||||||| |||| |||| |
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| T |
4728 |
tctctttgctagtagaccaccttctgaggcaggaaaactcat |
4769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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